CK937496

Overview
NameCK937496
Unique NameCK937496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSA 522
            KSV++S KAGLQFPVGRI R+LK G+YA+RVG+GAP                  GNAA+DNKK RIVPRH+ LA+RND+EL +LL  VTIA+GGV+PNI+  LLPKK  +     G+A
Sbjct:   20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAEKAEKAGAA 137          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            A  + SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+  LLPK  G+     G  SQE
Sbjct:   13 AKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSGR----TGKPSQE 131          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 71/119 (59.66%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSAS 525
            KSVS+S KAGLQFPVGRIAR+LK G+YA R G+GAP                  GNAARDNKKNRI PRH+ LA+RNDEEL +LL  VTIA+GGVLPNI+  LLPKK          AS
Sbjct:   24 KSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            K+V+RS KAGLQFPVGRI R+LK G+YA+RVG+GAP                  GNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            K+V+RS KAGLQFPVGRI R+LK G+YA+RVG+GAP                  GNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                   NAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            K+V+RS +AGLQFPVGRI RFLK G+YA+RVG GAP                  GNAARDNKKNRI PRH+ LAVRND EL KLL  VTIA GGVLPNI+  LLPK+
Sbjct:   22 KAVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            K+V+RS KAGLQFPVGRI R+LK G+YA+ VG+GAP                  GNAA+DNKK RI+PRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 504
            K S   SRS KAG+ FPVGR+ R++K G    R+G GAP                  GNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:    8 KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 504
            K S   SRS KAG+ FPVGR+ R++K G    R+G GAP                  GNAARDNKK R+ PRHI LAV NDEEL++LL  VTIA+GGVLPNIH  LL KK G KGK
Sbjct:    8 KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123          
The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A2_WHEAT1.266e-3056.78Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_SCHPO1.266e-3057.72Histone H2A-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2A5_ARATH2.159e-3059.66Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A5_WHEAT2.819e-3060.75Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A1_WHEAT2.819e-3060.75Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A1F_RAT2.819e-3061.11Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=... [more]
H2A2_PEA6.281e-3063.55Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A6_WHEAT1.399e-2959.81Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2AY_RAT4.213e-2656.03Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]
H2AY_MOUSE4.213e-2656.03Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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