CK937496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30 Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSA 522 KSV++S KAGLQFPVGRI R+LK G+YA+RVG+GAP GNAA+DNKK RIVPRH+ LA+RND+EL +LL VTIA+GGV+PNI+ LLPKK + G+A Sbjct: 20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKAAEKAEKAGAA 137
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30 Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531 A + SRS KAGL FPVGR+ R L+ G YA+RVGAGAP GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+ LLPK G+ G SQE Sbjct: 13 AKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSGR----TGKPSQE 131
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30 Identity = 71/119 (59.66%), Postives = 80/119 (67.23%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSAS 525 KSVS+S KAGLQFPVGRIAR+LK G+YA R G+GAP GNAARDNKKNRI PRH+ LA+RNDEEL +LL VTIA+GGVLPNI+ LLPKK AS Sbjct: 24 KSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30 Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 K+V+RS KAGLQFPVGRI R+LK G+YA+RVG+GAP GNAA+DNKK RI+PRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK Sbjct: 11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30 Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 K+V+RS KAGLQFPVGRI R+LK G+YA+RVG+GAP GNAA+DNKK RI+PRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK Sbjct: 11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30 Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP NAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30 Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 K+V+RS +AGLQFPVGRI RFLK G+YA+RVG GAP GNAARDNKKNRI PRH+ LAVRND EL KLL VTIA GGVLPNI+ LLPK+ Sbjct: 22 KAVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKR 128
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 K+V+RS KAGLQFPVGRI R+LK G+YA+ VG+GAP GNAA+DNKK RI+PRH+ LAVRND+EL +LL VTIA+GGV+PNI+ LLPKK Sbjct: 11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4) HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26 Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 504 K S SRS KAG+ FPVGR+ R++K G R+G GAP GNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 8 KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26 Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG-KGK 504 K S SRS KAG+ FPVGR+ R++K G R+G GAP GNAARDNKK R+ PRHI LAV NDEEL++LL VTIA+GGVLPNIH LL KK G KGK Sbjct: 8 KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123 The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bpback to top |