CK937496

Overview
NameCK937496
Unique NameCK937496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:1..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 71/112 (63.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            KS SRS +AGLQFPVGRI R L+ G YAER+GAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            + +KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   10 QGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            +K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A  + SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+  LLPK+ GKGK
Sbjct:   13 AKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 70/107 (65.42%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 74/120 (61.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  172 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            S SRS KAGL FPVGRI R L+ G YA+RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K       I  ASQE
Sbjct:   15 STSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSKK-----SIKGASQE 129          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 73/119 (61.34%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 519
            +SK+ SRS KAGLQFPVGRI R L+ G YA+RVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTI+ GGVLP I   LLP K GK K   GS
Sbjct:   15 SSKAQSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKSGKPKKAGGS 133          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +KSVS+S KAGLQFPVGRI RFLK G+YA+R+G GAP                  GNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129          
The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_ORYSJ3.012e-3263.30Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI3.012e-3263.30Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A_SIPNU3.934e-3263.39Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_ACRFO3.934e-3263.72Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2AX_XENLA3.934e-3258.20Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2A2_SCHPO3.934e-3261.40Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A2_MEDTR3.934e-3265.42Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A1_PICGU3.934e-3261.67Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=... [more]
H2A_USTMA5.138e-3261.34Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3[more]
H2A7_ARATH5.138e-3263.89Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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