CK937496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32 Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495 K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK G Sbjct: 25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32 Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495 K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK G Sbjct: 25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 71/112 (63.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504 KS SRS +AGLQFPVGRI R L+ G YAER+GAGAP GNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK K K Sbjct: 13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498 + +KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP GNAARDNKK+RI+PRH+QLAVRNDEEL+KLL VTIA GGVLPNI LLPKK K Sbjct: 10 QGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531 +K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK G G S + Sbjct: 13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 1 Query: 163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504 A + SRS KAGL FPVGR+ R L+ G YA+RVGAGAP GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+ LLPK+ GKGK Sbjct: 13 AKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 70/107 (65.42%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32 Identity = 74/120 (61.67%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 172 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531 S SRS KAGL FPVGRI R L+ G YA+RVG+GAP GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K I ASQE Sbjct: 15 STSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSKK-----SIKGASQE 129
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3) HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32 Identity = 73/119 (61.34%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 519 +SK+ SRS KAGLQFPVGRI R L+ G YA+RVGAGAP GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTI+ GGVLP I LLP K GK K GS Sbjct: 15 SSKAQSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKSGKPKKAGGS 133
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32 Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1 Query: 166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 +KSVS+S KAGLQFPVGRI RFLK G+YA+R+G GAP GNAARDNKK+RI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 22 TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129 The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bpback to top |