CK937496

Overview
NameCK937496
Unique NameCK937496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 71/112 (63.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            KS +RS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 70/113 (61.95%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            +SK VSRS +AGLQFPVGRI+RFLK G+Y+ERVG GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   16 SSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 AKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 70/113 (61.95%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 70/107 (65.42%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   23 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            A  S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   12 AKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 70/108 (64.81%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_STRPU6.710e-3262.16Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_PLADU6.710e-3263.39Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAIMO6.710e-3261.95Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AX_TETTH6.710e-3259.35Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AL_STRPU6.710e-3263.06Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AE_PSAMI6.710e-3262.16Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A4_CHICK6.710e-3261.95Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A3_MEDTR6.710e-3265.42Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A2_ASHGO6.710e-3258.54Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A2B_MOUSE6.710e-3264.81Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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