CX675323

Overview
NameCX675323
Unique NameCX675323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.255e-52
Identity = 101/206 (49.03%), Postives = 139/206 (67.48%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMP--QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T++ L++YC LPA+ L + +FI+    ++ L  ++ I++ L + A  +LE++WSG+ ++EWWRNEQFW+IGG S+HL AV QGLLKV+AGI+ +FT+TSK    D D +F ELY  KW          ++INLV +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VWS L+A   SLLW+ + P
Sbjct:  908 TSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLA--MLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP 1111          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.255e-52
Identity = 101/206 (49.03%), Postives = 139/206 (67.48%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMP--QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T++ L++YC LPA+ L + +FI+    ++ L  ++ I++ L + A  +LE++WSG+ ++EWWRNEQFW+IGG S+HL AV QGLLKV+AGI+ +FT+TSK    D D +F ELY  KW          ++INLV +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VWS L+A   SLLW+ + P
Sbjct:  908 TSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLA--MLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP 1111          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.388e-51
Identity = 95/204 (46.57%), Postives = 137/204 (67.16%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD--FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T++ L+MYC LPA+ L + +FI+  +        + + +++    +LE++WSG+G++EWWRNEQFWVIGG S+HL AV QGLLKV+AGI+ +FT+T+KA+ ED D  F ELY+ KW          + IN++ +V GVS  + +    +  L G  FF+FWV+ H YPF KGLMGR+ RTPTIV VW+ L++   SLLW+ + P
Sbjct:  797 TSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.388e-51
Identity = 95/204 (46.57%), Postives = 137/204 (67.16%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD--FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T++ L+MYC LPA+ L + +FI+  +        + + +++    +LE++WSG+G++EWWRNEQFWVIGG S+HL AV QGLLKV+AGI+ +FT+T+KA+ ED D  F ELY+ KW          + IN++ +V GVS  + +    +  L G  FF+FWV+ H YPF KGLMGR+ RTPTIV VW+ L++   SLLW+ + P
Sbjct:  797 TSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.617e-50
Identity = 90/204 (44.12%), Postives = 135/204 (66.18%), Query Frame = -3
Query:  261 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKAS----DEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRV 860
            T+I +L YC LP + L +  F++  ++    I  + + LS+    +LE++WSG+ ++EWWRNEQFW+IGG S+HL AV QG+LKV+AG++ +FT+TSK+S    DED +F +LY+FKW          +++N+V ++  V   + S    W  L G  FFA WV++H+YPF KGLMGR  +TPT+V VWS L+A   SLL++ +
Sbjct:  763 TSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSAHLVAVLQGILKVIAGVEISFTLTSKSSTGGDDEDDEFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.418e-50
Identity = 100/216 (46.30%), Postives = 137/216 (63.43%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMPQISN--LASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD------------FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T++ LL YC LPAV L + KFI+ ++S   LA ++ I+L L + A  +LE++WSG+ + EWWRNEQFWVIGG S+H  AV QGLLKV+AG+D +FT+TSK  +  GD            F ELY  +W          +++N V +    +  + S +  W  L G  FF+FWV+ HLYPF KGL+GR+ R PTIV VWS L++ I SLLWV ++P
Sbjct:  986 TSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLA--LLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPGNGGGDGGVGGEGNDDEAFAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.830e-50
Identity = 87/206 (42.23%), Postives = 134/206 (65.05%), Query Frame = -3
Query:  249 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD--FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFT 860
            T++ L++YC LPA  L + +FI+  +S    +  + + + +    +LE++WSG+G++EWWRNEQ+W+I G SSHL+AV QG+LKV+AGI+ +FT+T+K+  +D +  + +LY+ KW           ++N++ +V      I      W  L G  FF+FWV+ HLYPF KGLMGR+ +TPTIV VW+ L+A   SLLW  ++P T
Sbjct:  889 TSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSSHLYAVVQGVLKVIAGIEISFTLTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNT 1094          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.696e-49
Identity = 90/204 (44.12%), Postives = 136/204 (66.67%), Query Frame = -3
Query:  255 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD--FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDP 860
            T+I LL+YC +PA+ L +  FI+ ++        +++ +++ A GILE++WSG+ +++WWRNEQFW+I G S+HL+AV QGLLKV+AGI+ +FT+T+KA+ +D +  + +LY+ KW           ++N++ +    +  I S    WG   G  FF+FWV+ HL PF KGLMGR+ +TPTIV VWS LL+   SLLWV + P
Sbjct:  927 TSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSAHLYAVVQGLLKVMAGIEISFTLTAKAAADDNEDIYADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP 1130          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 91/230 (39.57%), Postives = 126/230 (54.78%), Query Frame = -3
Query:  219 LTAIPLLMYCTLPAVCLLTNKFIMPQ-ISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKAS------------DEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSG-YQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT-PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQ 863
            L ++PL +YC LPAVCLLT K   P  +S    ++ I L  S+ A+  LE+RWS V +  WWR+E+ W++   S+ L AVFQG+L    GID  F+  + AS            +E+         +W          +V NL GVVA V+Y ++ G YQSWG L  KL  A WV+ HL  FL+GL+  ++R  PTI V+WS++  S+ SLLWV    F+     P  EQ
Sbjct:  628 LASLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWWRDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSAPTAAPTTEQ 857          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31
Identity = 65/203 (32.02%), Postives = 118/203 (58.13%), Query Frame = -3
Query:  261 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGD-FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRV 860
            TA+ L+ Y T+PA+  +T  FI+ + + +  +    +  ++    +LE++W+GV + EW+RN QFW+    S++L AV Q + KV+   D +F +TSK  A DE  D + +LY+ +W          +++N++G     +  ++  +  W  + G +FF FWV+ HLYPF KG++G+  +TP +V+VW      I ++L++ +
Sbjct:  716 TALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 918          
The following BLAST results are available for this feature:
BLAST of CX675323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CSLD1_ORYSJ1.255e-5249.03Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI1.255e-5249.03Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD5_ORYSJ1.388e-5146.57Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI1.388e-5146.57Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD6_ARATH2.617e-5044.12Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD4_ORYSJ3.418e-5046.30Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD4_ARATH5.830e-5042.23Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ORYSJ1.696e-4944.12Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CESAB_ORYSJ2.900e-4139.57Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ1.221e-3132.02Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61E02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E02-J3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675323 ID=CX675323; Name=CX675323; organism=Citrus sinensis; type=EST; length=865bp
TTTTTTTTAGTTTTCACCACCTATAGATATATAAATATATGTATCCTGCA
CAAGATGCGAATTCACATACACAAAAACAAGTTCACATACACAAAAACAA
GTTCACTGACAGGACGAGGAGGCAAAATCATGAACTTCAGTGATTCCCAC
CTTTTAGACTTGAGACCAAAACAATTTTTCTGAAATACAGCCACTATTTG
TCAGCAGTTGATTCCACATTGCTCGACATCAGGACCAGTGACTCTGGTGG
TAAAGGGATCAACTCGCACCCATAGTAAAGAGAATATGGAGGCAAGGAGA
ATTGACCACACGACAACAATGGTGGGTGTCCGGTTTTGGCGTCCCATCAA
ACCTTTGAGGAAGGGGTAAAGATGGACGATCACCCAAAAGGCAAAGAATA
GCTTACCAAAGAGAGGACCCCATGATTGATACCCGCTGTTGATGGCATAC
GAGACACCCGCAACTACACCAACCAAGTTTATGACAAGAAGAGTTGTTGG
TGGAATAAGTAGTGTTGTCCATTTGAACATATAGAGCTCAGTAAAATCTC
CGTCTTCATCTGATGCCTTGGAGGTGACAGTGAAGTTGGTGTCAATACCA
GCAAGTACTTTGAGAAGACCTTGGAAAACAGCAAATAGATGGGATGAAAC
ACCGCCAATAACCCAAAACTGTTCGTTTCTCCACCATTCATCGATTCCAA
CACCACTCCACCTCATTTCCAGAATACCAGTGGCGAAGATGGACAGAAAG
AGAGAAATAAACACTATACTGGCAAGGTTACTAATCTGAGGCATAATGAA
CTTGTTCGTTAATAGACAGACAGCTGGCAGCGTGCAATACATGAGAAGAG
GAATTGCAGTGAGAG
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