CX675323

Overview
NameCX675323
Unique NameCX675323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = -3
Query:  330 TAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFIS-LFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--------ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSW---------GPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 860
            T++ L+ YC  PA+ L+              + F++ L +++ A  +LE RWSG+ + EWWRNEQFW++   S++L AV Q  LKV  G + +F +TSK         + +D  + ELY  +W          L +N    VA ++ A   G   W               + F  WV+VHLYPF  GLMGR+++
Sbjct:  611 TSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAALMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVN----VASMAAAGGGGRWWWWDAPSAAAAAAAALPVAFNVWVVVHLYPFALGLMGRRSK 801          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.686e-18
Identity = 61/206 (29.61%), Postives = 107/206 (51.94%), Query Frame = -3
Query:  267 LTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINL--VGVVAG---VSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWV 863
            +T++ +L+Y   P + L+ ++  + +      +  + + L I   G LE++W+G+   ++WRNEQF++IG  S++  AV   ++ +L     +F VTSK   +D +  F +LY  +W          LV N+  +GV  G   V   + +  Q    + G L F  WV+  LYPF   +MGR  + P I+VV   ++  I +L++V
Sbjct:  652 VTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAIGVAIGKMAVYMGVWTIAQKRHAIMG-LLFNMWVMFLLYPFALAIMGRWAKRPIILVVLLPIIFVIVALVYV 856          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.686e-18
Identity = 54/220 (24.55%), Postives = 104/220 (47.27%), Query Frame = -3
Query:  234 LTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVD-PFTTRVTG 863
            +  + +  Y   P + L++ ++ + +      +  +++   I   G+ E++W+G+ + +W RNEQF++IG    +  AV    LK++ G    F +TSK  A+     F +LY  +W          +V+N+  V   V  A      +WGPL          + F  W++V LYPF  G+MG+  + P ++ V   +  +  + ++V    P+   ++G
Sbjct:  628 IVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 842          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 54/209 (25.84%), Postives = 103/209 (49.28%), Query Frame = -3
Query:  270 LTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK-ASDEDGD-FTELYMFKWXXXXXXXXXXLVINL--VGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLW 863
            +  + +  Y   P + L++ ++ + Q      +  +++   I   G+ E++WSG+ + +W RNEQF++IG    +  AV    LK+  G   +F +TSK  +   GD F +LY  +W          L +N+  VGV  G + A       WG L  +       + F  W++  LYPF  G+MG++ + P ++ V +++  +  ++++
Sbjct:  667 IVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRNEQFYMIGSTGVYPTAVLYMALKLFTGKGIHFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVVLAVNVGAVGVAVGKAAA-------WGLLTEQGRFAVLGMVFNVWILALLYPFALGIMGQRGKRPAVLFVATVMAVAAVAIMY 868          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 55/220 (25.00%), Postives = 105/220 (47.73%), Query Frame = -3
Query:  234 LTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK-ASDEDGD-FTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVD-PFTTRVTG 863
            +  + +  Y   P + L++ ++ + +      +  +++   I   G+ E++W+G+ + +W RNEQF++IG    +  AV    LK++ G    F +TSK  +   GD F +LY  +W          +V+N+  V   V  A      +WGPL          + F  W++V LYPF  G+MG+  + P ++ V   +  +  + ++V    P+   ++G
Sbjct:  658 IVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKA-----AAWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 872          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 55/205 (26.83%), Postives = 100/205 (48.78%), Query Frame = -3
Query:  276 LTAIPLLMYCTLPAVCLLTNKFIMPQ-----ISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKV--LAGIDTNFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGY--QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSL 863
            +T++ LL Y   P + +    F + +     +  L  ++F+S  +     G++E++W+G+ + +W RNEQF++IG  + +  AV   +LK   L G+    T    AS     F ELY  +W          + +N+  + A +  A+  G+     G     L F  W+++ +YPF  G+MGR ++ P I+ V  ++   I +L
Sbjct:  656 VTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMI-----GMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSKRPYILFVLIVISFVIIAL 855          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 59/199 (29.65%), Postives = 105/199 (52.76%), Query Frame = -3
Query:  288 LTAIPLLMYCTLPAVCLLTN-KFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGI-DTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGY---QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLAS 863
            ++A+ +++Y  LP + L  + +F + +  +      +++   I   G++E++W+G+ + +WWRNEQF++IG    +L AV   +LK L G+    F +T+K  A      F ELY   W          + +N+  + A    A+  G+   Q  G   G L F  WV+V LYPF  G+MGR ++ P    ++++L+A+
Sbjct:  644 VSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAG-LVFNVWVLVLLYPFALGIMGRWSKRP--CALFALLVAA 839          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16
Identity = 58/207 (28.02%), Postives = 104/207 (50.24%), Query Frame = -3
Query:  267 LTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK--ASDEDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGPLFGK------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWV 863
            +T++ +L+Y   P + L+ ++  + +      +  + + L I   G LE++W+G+   ++WRNEQF++IG  S++  AV   ++ +L     +F VTSK   +D +  F +LY  +W          LV N+  +  GV+    + Y     +  K      L F  WV+  LYPF   +MGR  +   I+VV   ++  I +L++V
Sbjct:  652 VTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRNEQFFMIGSTSAYPTAVLHMVVNLLTKKGIHFRVTSKQTTADTNDKFADLYEMRWVPMLIPTMVVLVANIGAI--GVAIGKTAVYMGVWTIAQKRHAAMGLLFNMWVMFLLYPFALAIMGRWAKRSIILVVLLPIIFVIVALVYV 856          
BLAST of CX675323 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = -3
Query:  339 AIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD--EDGDFTELYMFKWXXXXXXXXXXLVINLVGVVAGVSYAINSGYQSWGP-LFGKLFFAFWVIVHLYPFLKGLMGR 857
            ++PL++Y  LP + LL    + P+ S+    ++I LFL  +   +L+    G     WW +++ W I G SSHLF   +  LK L      F VTSKA+D  E     E  +F++            + +V ++A V      G  +WG  L  +L  A + +V+  P  + ++ R
Sbjct:  548 SLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGLY--GLFAWGEGLVLELMLASFAVVNCLPIYEAMVLR 721          
The following BLAST results are available for this feature:
BLAST of CX675323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CSLF7_ORYSJ1.768e-2232.82Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF3_ORYSI7.686e-1829.61Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF1_ORYSJ7.686e-1824.55Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ1.004e-1725.84Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF2_ORYSJ1.311e-1725.00Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF8_ORYSJ2.921e-1726.83Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF9_ORYSJ1.110e-1629.65Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF3_ORYSJ1.449e-1628.02Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLG3_ARATH3.128e-1128.41Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61E02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E02-J3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675323 ID=CX675323; Name=CX675323; organism=Citrus sinensis; type=EST; length=865bp
TTTTTTTTAGTTTTCACCACCTATAGATATATAAATATATGTATCCTGCA
CAAGATGCGAATTCACATACACAAAAACAAGTTCACATACACAAAAACAA
GTTCACTGACAGGACGAGGAGGCAAAATCATGAACTTCAGTGATTCCCAC
CTTTTAGACTTGAGACCAAAACAATTTTTCTGAAATACAGCCACTATTTG
TCAGCAGTTGATTCCACATTGCTCGACATCAGGACCAGTGACTCTGGTGG
TAAAGGGATCAACTCGCACCCATAGTAAAGAGAATATGGAGGCAAGGAGA
ATTGACCACACGACAACAATGGTGGGTGTCCGGTTTTGGCGTCCCATCAA
ACCTTTGAGGAAGGGGTAAAGATGGACGATCACCCAAAAGGCAAAGAATA
GCTTACCAAAGAGAGGACCCCATGATTGATACCCGCTGTTGATGGCATAC
GAGACACCCGCAACTACACCAACCAAGTTTATGACAAGAAGAGTTGTTGG
TGGAATAAGTAGTGTTGTCCATTTGAACATATAGAGCTCAGTAAAATCTC
CGTCTTCATCTGATGCCTTGGAGGTGACAGTGAAGTTGGTGTCAATACCA
GCAAGTACTTTGAGAAGACCTTGGAAAACAGCAAATAGATGGGATGAAAC
ACCGCCAATAACCCAAAACTGTTCGTTTCTCCACCATTCATCGATTCCAA
CACCACTCCACCTCATTTCCAGAATACCAGTGGCGAAGATGGACAGAAAG
AGAGAAATAAACACTATACTGGCAAGGTTACTAATCTGAGGCATAATGAA
CTTGTTCGTTAATAGACAGACAGCTGGCAGCGTGCAATACATGAGAAGAG
GAATTGCAGTGAGAG
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