CK937493

Overview
NameCK937493
Unique NameCK937493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 71/151 (47.02%), Postives = 90/151 (59.60%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KA+ ++ G     G + F Q   D P +++G L  L  G HGFHVH  GDT+NGC S G HFNP  + HGAP+   RH               T   + DN I L GP SI+GR++VVH D DDLG G H LSK+TGN+GGR+ CGIIG+
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIGV 149          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.745e-31
Identity = 66/149 (44.30%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGII 556
            MV A+ ++ G  GV+G V+ +QE +G P  ++G++SGL PG HG HVH  GDT+NGC+S G H+NP  +EHG+P D  RH              AT ++ D  + L G  S++GR +V+H+D DD G+G    SK+ G++G RV CGII
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  122 AVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGII 556
            AVA+LGG   V+G V F Q       + G++ GL+PG HG HVH  GD TN C S G HFNP G  HG P+D +RH              A F + D Q+ +     +IGR++++    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  122 AVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGII 556
            AVA++ G+  V+G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++VV    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 69/152 (45.39%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKSTGNAGGRVACGIIGL 562
            KAVAVL  ++ V G + F Q      TT+ G+++GL PG HGFH+H  G   NGC S   H+NP  K HG P ++ +H              A   ++ N I LSGP S+IGR++VVHA+PDDLGKG     E S  TGNAG R+ C IIG+
Sbjct:   41 KAVAVLK-SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIGI 191          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 72/149 (48.32%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPG-PHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 559
            V A+AVL G   VKGTV F +E      +S  +SGLKP   HGFHVH  GD T+GC S   HFNP G  HG P+   RH              A ++  D+ I L G  +IIGRA+VVHAD DDLG GG+  S  TGNAG R+ C +IG
Sbjct:   35 VSAIAVLEGP--VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 66/145 (45.52%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  122 AVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGII 556
            AVA+LGG+  V+G V F Q       + G++ GLKPG HG HVH  GD T  C S G HFNP G  HG P+D +RH              A F + D  + +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  122 AVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGII 556
            AVA+L G   ++G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 72/152 (47.37%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MV+AVAVL G   V G V+F Q + +   +V   L G       GFH+H  GD TNGC S GPHFNP GK HG      RH                 T  D+ I L G NSIIGR +V+HA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:    1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 68/146 (46.58%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  113 MVKAVAVLGGTEG-VKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVA 544
            MVKAV VL GT G V GTV F QE D  P  ++G + GL PG HGFHVHA GD TN               H  P D +RH              A   + D  + L+GP SIIGR +V+H   DDLGKGG++ S  TGNAGGR+A
Sbjct:    1 MVKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
The following BLAST results are available for this feature:
BLAST of CK937493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_NPVOP2.102e-3147.02Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODC6_DICDI2.745e-3144.30Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
CCS_HUMAN2.324e-3045.52Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT3.964e-3045.52Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODE_DIRIM5.178e-3045.39Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_PBCV15.178e-3048.32Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
CCS_PIG5.178e-3045.52Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_MOUSE5.178e-3044.83Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODC_SCHPO1.275e-2847.37Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_LAMCR1.559e-2646.58Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937493 ID=CK937493; Name=CK937493; organism=Citrus sinensis; type=EST; length=737bp
CGGGGGACACACACACACACACACACTCTCNNNCTCTNNNACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTTT
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