CK937493

Overview
NameCK937493
Unique NameCK937493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937493_ssr7 microsatellite CK937493_ssr7:7..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2345 contig Csv1_Contig2345:74..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  152 VKGTVSFAQEGDGPT-----TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 559
            + G V F Q G G       ++ G  +         HVH  GD + GC STGPH+NP    H     D  +               T +       L+GP++I+GR+VVVHA  DDLGKGG++ S   GNAG R+AC ++G
Sbjct:   92 ITGLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGNFVVRNGQLWRHRVGLTAS-------LAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 2
Query:  434 PNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            PNS++GRA+VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:  156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 48/153 (31.37%), Postives = 69/153 (45.10%), Query Frame = 2
Query:  131 VLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNG---------CMSTGPHFNP-AGKEHGAPE--DDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGI 553
            +L  T  V GT +F+    G T VS  +SGLK GPHG H+H   +   G           + G HF+P A   H  P   +D  H                     N++ ++GP  ++GR++V+HAD DD        +   GN+GGR  CG+
Sbjct:   32 LLDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADDY------QTNPAGNSGGRERCGV 177          
The following BLAST results are available for this feature:
BLAST of CK937493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODE_MOUSE1.910e-1636.17Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODCP_POPTM2.582e-1376.74Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC_DEIRA2.185e-1231.37Superoxide dismutase [Cu-Zn] OS=Deinococcus radiod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937493 ID=CK937493; Name=CK937493; organism=Citrus sinensis; type=EST; length=737bp
CGGGGGACACACACACACACACACACTCTCNNNCTCTNNNACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTTT
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