CK937493

Overview
NameCK937493
Unique NameCK937493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937493_ssr7 microsatellite CK937493_ssr7:7..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2345 contig Csv1_Contig2345:74..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 95/148 (64.19%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V+G V+  Q+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HGAP D+ RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   69 KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.003e-49
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAV+VL GT  V+G V+  Q+ +GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   52 KAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 93/148 (62.84%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V+G V+  Q+  GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VD QIPLSGPNS++GRA VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   61 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.813e-49
Identity = 93/148 (62.84%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL G   V+G V+  QE + PTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS+IGRA+VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   52 KAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.813e-49
Identity = 94/151 (62.25%), Postives = 109/151 (72.19%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 565
            ++KAVAV+ G   VKG++ F Q+  G T V G ++GL PG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RHA             A  +V D QIPLSG +SI+GRAVVVHAD DDLG+ GHELSK+TGNAG RV CGIIGLQ
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQ 153          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 91/148 (61.49%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL G   V+G V+ +Q+ DGPTTV+  ++GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAP D+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   67 KAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 88/137 (64.23%), Postives = 102/137 (74.45%), Query Frame = 2
Query:  152 VKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            V+G V+ +QE +GPTTV   L+GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAPEDD RHA             A  T+VDNQIPLSGP+S+IGRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.021e-46
Identity = 91/148 (61.49%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAVAVL GT  V G V+  QE DGPTTV+  ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP D  RHA             A  T+VD+QIPLSG NS++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   66 KAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 213          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 90/151 (59.60%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QEG+G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 89/151 (58.94%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE +G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D++I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CK937493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODCP_PETHY6.949e-5164.19Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PEA1.003e-4962.16Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_ORYSJ2.920e-4962.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA3.813e-4962.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODC2_MESCR3.813e-4962.25Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_SOLLC2.472e-4861.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_PINSY1.356e-4664.23Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_ZANAE3.021e-4661.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_DROVI1.148e-4559.60Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DROWI3.341e-4558.94Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937493 ID=CK937493; Name=CK937493; organism=Citrus sinensis; type=EST; length=737bp
CGGGGGACACACACACACACACACACTCTCNNNCTCTNNNACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTTT
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