CK937493

Overview
NameCK937493
Unique NameCK937493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937493_ssr7 microsatellite CK937493_ssr7:7..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2345 contig Csv1_Contig2345:74..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 89/151 (58.94%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 89/151 (58.94%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 89/151 (58.94%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 89/151 (58.94%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 89/151 (58.94%), Postives = 103/151 (68.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 89/151 (58.94%), Postives = 103/151 (68.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.693e-44
Identity = 87/150 (58.00%), Postives = 99/150 (66.00%), Query Frame = 2 
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV V+ GT GVKG V F QE D GP  V    SGLK G HGFHVH  GDTTNGC S G HFNP  +EHGAPED  RH              A +   D  I L+G +SIIGR +V+H + DDLG+GGHELSK TGNAGGR+ACG+IGL
Sbjct:    1 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.300e-44
Identity = 87/151 (57.62%), Postives = 100/151 (66.23%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            + KAV V+ G    KGTV F QE    P  V G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D++I L G NSI+GR VVVHADPDDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VAKAVCVINGD--AKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 84/149 (56.38%), Postives = 98/149 (65.77%), Query Frame = 2 
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL GT  V GTV F Q  DGP T+ GS++GL PG HGFHVHA GD TNGC+S GPH+NP  K HG P+D+ RH              A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149
[Close]
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 88/151 (58.28%), Postives = 103/151 (68.21%), Query Frame = 2 
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
The following BLAST results are available for this feature:
BLAST of CK937493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROSI2.165e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE2.165e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME2.165e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA2.165e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROYA2.828e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR2.828e-4458.94Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_SCHMA3.693e-4458.00Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_CHYAM6.300e-4457.62Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_PRIGL8.228e-4456.38Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_DROTE8.228e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937493 ID=CK937493; Name=CK937493; organism=Citrus sinensis; type=EST; length=737bp
CGGGGGACACACACACACACACACACTCTCNNNCTCTNNNACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTTT
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