CK937493

Overview
NameCK937493
Unique NameCK937493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937493_ssr7 microsatellite CK937493_ssr7:7..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2345 contig Csv1_Contig2345:74..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 87/151 (57.62%), Postives = 102/151 (67.55%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            MVKAV V+ G    KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    1 MVKAVCVINGD--AKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGI 149          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.127e-43
Identity = 88/151 (58.28%), Postives = 102/151 (67.55%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G    KGTV F QE  + P  VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 83/137 (60.58%), Postives = 95/137 (69.34%), Query Frame = 2
Query:  155 KGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KGTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42
Identity = 85/149 (57.05%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL G+  VKGT++F Q+  G  TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HGAPEDD RH              AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SK+TG+AGGR++CG+IG+
Sbjct:    3 IKAVCVLVGS--VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.006e-41
Identity = 84/151 (55.63%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +VKAV V+ G   VKGTV F Q+    P  V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HGAP D NRH                  + D  I L G NSI+GR +VVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.822e-41
Identity = 82/149 (55.03%), Postives = 95/149 (63.76%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 559
            MVKAV VL G+  VKG V F Q+ +G  +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HGAP D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHV-GDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 82/149 (55.03%), Postives = 93/149 (62.42%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 559
            MVKAV VL G+  VKG V F Q+ DG  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG+P+D +RH              A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+ACG+IG
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAV VL G   V+G + F Q+ +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I LSG NSIIGR +VVH  PDDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 81/150 (54.00%), Postives = 100/150 (66.67%), Query Frame = 2
Query:  116 VKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PED+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CK937493 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 82/149 (55.03%), Postives = 96/149 (64.43%), Query Frame = 2
Query:  119 KAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 562
            KAV VL GT  V GTV F QEG+  P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH              A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of CK937493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROPS8.228e-4457.62Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_DROER3.127e-4358.28Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_DROBS5.333e-4360.58Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_HALRO2.027e-4257.05Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CERCA1.006e-4155.63Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC2_XENLA3.822e-4155.03Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC1_XENLA8.515e-4155.03Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CAVPO1.112e-4052.70Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_CALJA1.452e-4054.00Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_DANRE2.477e-4055.03Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937493 ID=CK937493; Name=CK937493; organism=Citrus sinensis; type=EST; length=737bp
CGGGGGACACACACACACACACACACTCTCNNNCTCTNNNACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTTT
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