EY665879

Overview
NameEY665879
Unique NameEY665879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665879_ssr22 microsatellite EY665879_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.507e-20
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2
Query:   86 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  P
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQP 139          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.020e-19
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSP 140          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSP 141          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19
Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG + +S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVP 148          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K +  P+R +EK RL+ E RL+ +YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQTLV + G A+S   AR  I   HI +  + V IP
Sbjct:    9 KQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIP 145          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSP 141          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSP 141          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSP 141          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSP 141          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSP 141          
The following BLAST results are available for this feature:
BLAST of EY665879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_KORCO3.507e-2038.8530S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_PYRKO1.020e-1942.9630S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_SULSO3.877e-1938.5230S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METBF5.064e-1937.5930S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_METMJ6.614e-1941.3030S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_SULIY1.128e-1838.5230S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN1.128e-1838.5230S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM1.128e-1838.5230S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.128e-1838.5230S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.128e-1838.5230S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665879 ID=EY665879; Name=EY665879; organism=Citrus sinensis; type=EST; length=833bp
GCTTTTACAAAGATCGCCCATAGAGAGAGAGAGAGAGTGAGGGTAGCACC
AGCGGCGCGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAA
ACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGA
GTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGA
GGGTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTC
ACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCT
CAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTG
ATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAG
ACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGT
GCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTC
CCCTCATTTGTAGTGAGGGTTGATTCCCAAAAACCCATTGAATTCTCCCT
CACAAGTCCCTTCGGAGGTGGGCGGCCCTGGAAAAAGTGGAAAAAAGGAA
CCTCAACGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGCGGATAAATAT
GCATGACCAATACATTACACGGCGTGACAGCGATTCGTCGTTTCTCCCGT
TAAACGAGGGACTTCTGGCCTATCCTCCCAAAAGTCGCATTCCCCCTCCC
ACTCCCCCGGGTTCATATCATGGTCAGCACCCGCGCGATTCACCGAGGGC
CGCTCACAATTTCACTAGGATTTAATGAGGAAA
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