EY665879

Overview
NameEY665879
Unique NameEY665879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665879_ssr22 microsatellite EY665879_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAP 140          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 50/139 (35.97%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   86 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N P
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSP 140          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ P
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAP 142          
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.681e-11
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 2
Query:  425 AKSIHHARVLIRQRHIRVGRQLVNIP 502
            AKS+HHARVLIRQRHIRVGRQ+VN+P
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVP 26          

HSP 2 Score: 36.1946 bits (82), Expect = 3.681e-11
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SPF
Sbjct:   26 PSFMVRLDSQKHIDFSLISPF 46          
The following BLAST results are available for this feature:
BLAST of EY665879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METST6.844e-1635.5630S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS39.883e-1535.9730S ribosomal protein S4P OS=Methanobrevibacter sm... [more]
RS4_NATPD4.905e-1435.2930S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS9_TOBAC3.681e-1188.4640S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665879 ID=EY665879; Name=EY665879; organism=Citrus sinensis; type=EST; length=833bp
GCTTTTACAAAGATCGCCCATAGAGAGAGAGAGAGAGTGAGGGTAGCACC
AGCGGCGCGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAA
ACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGA
GTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGA
GGGTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTC
ACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCT
CAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTG
ATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAG
ACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGT
GCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTC
CCCTCATTTGTAGTGAGGGTTGATTCCCAAAAACCCATTGAATTCTCCCT
CACAAGTCCCTTCGGAGGTGGGCGGCCCTGGAAAAAGTGGAAAAAAGGAA
CCTCAACGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGCGGATAAATAT
GCATGACCAATACATTACACGGCGTGACAGCGATTCGTCGTTTCTCCCGT
TAAACGAGGGACTTCTGGCCTATCCTCCCAAAAGTCGCATTCCCCCTCCC
ACTCCCCCGGGTTCATATCATGGTCAGCACCCGCGCGATTCACCGAGGGC
CGCTCACAATTTCACTAGGATTTAATGAGGAAA
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