CK937484

Overview
NameCK937484
Unique NameCK937484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1733_STAAW (UPF0161 protein MW1733 OS=Staphylococcus aureus (strain MW2) GN=MW1733 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            L+M+ FY+R ISPL P +CR+ PTCSEY+ +A + +G  KG  L   R+ +C+PL   GFDP
Sbjct:    6 LAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1715_STAAS (UPF0161 protein SAS1715 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1715 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            L+M+ FY+R ISPL P +CR+ PTCSEY+ +A + +G  KG  L   R+ +C+PL   GFDP
Sbjct:    6 LAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1649_STAAB (UPF0161 protein SAB1649 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1649 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            L+M+ FY+R ISPL P +CR+ PTCSEY+ +A + +G  KG  L   R+ +C+PL   GFDP
Sbjct:    6 LAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1613_STAAN (UPF0161 protein SA1613 OS=Staphylococcus aureus (strain N315) GN=SA1613 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            L+M+ FY+R ISPL P +CR+ PTCSEY+ +A + +G  KG  L   R+ +C+PL   GFDP
Sbjct:    6 LAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1566_DEIGD (UPF0161 protein Dgeo_1566 OS=Deinococcus geothermalis (strain DSM 11300) GN=Dgeo_1566 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  346 SLGVRAALSMLSFYKREISPLMPR-SCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP-----PRW 561
            S   R  + ++  Y+R +SP  P  +CR+ PTCS+Y+++A +++G +KG  L AWR+ RCNPL   G DP     P W
Sbjct:    2 SAAARGLVRLVKSYQRHLSPRKPAPTCRFTPTCSQYAVEAIERHGALKGAWLAAWRVLRCNPLVPGGCDPVPEHFPSW 79          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1174_HAEI8 (UPF0161 protein NTHI1174 OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI1174 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  337 EVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            E +SLG +  + ++  Y+  ISP +   CR+VPTCS Y ++A K +G++KG  LT  R+ +C+PL   GFDP
Sbjct:    3 ETHSLGTKILIKIIRLYQIMISPFIGARCRFVPTCSCYGIEALKTHGLLKGGWLTLKRVLKCHPLNAGGFDP 74          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1000_HAEIN (UPF0161 protein HI1000 OS=Haemophilus influenzae GN=HI1000 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  337 EVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            E +SLG +  + ++  Y+  ISP +   CR+VPTCS Y ++A K +G++KG  LT  R+ +C+PL   GFDP
Sbjct:    3 ETHSLGTKILIKIIRLYQIMISPFIGARCRFVPTCSCYGIEALKTHGLLKGGWLTLKRVLKCHPLNAGGFDP 74          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y003_FUSNN (UPF0161 protein FN0003 OS=Fusobacterium nucleatum subsp. nucleatum GN=FN0003 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++ FY++ ISP+ P  CR+ PTCS+Y+++A K++G +KGT L   R+ +C+P    G+DP
Sbjct:    8 LIRFYQKFISPMFPAKCRFYPTCSQYTLEAIKEHGTIKGTYLAIRRILKCHPFHEGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4947_BACC1 (UPF0161 protein BCE_4947 OS=Bacillus cereus (strain ATCC 10987) GN=BCE_4947 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            + ++ FY++ ISP+ P +CR+ PTCS Y ++A++K+G +KG  LT  R+ +C+P    GFDP
Sbjct:    6 IGIIRFYQKFISPMTPPTCRFYPTCSHYGLEAFQKHGALKGFWLTCKRILKCHPFHPGGFDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4932_BACC7 (UPF0161 protein BCAH187_A4932 OS=Bacillus cereus (strain AH187) GN=BCAH187_A4932 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            + ++ FY++ ISP+ P +CR+ PTCS Y ++A++K+G +KG  LT  R+ +C+P    GFDP
Sbjct:    6 IGIIRFYQKFISPMTPPTCRFYPTCSHYGLEAFQKHGALKGFWLTCKRILKCHPFHPGGFDP 67          
The following BLAST results are available for this feature:
BLAST of CK937484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
Y1733_STAAW6.875e-1250.00UPF0161 protein MW1733 OS=Staphylococcus aureus (s... [more]
Y1715_STAAS6.875e-1250.00UPF0161 protein SAS1715 OS=Staphylococcus aureus (... [more]
Y1649_STAAB6.875e-1250.00UPF0161 protein SAB1649 OS=Staphylococcus aureus (... [more]
Y1613_STAAN6.875e-1250.00UPF0161 protein SA1613 OS=Staphylococcus aureus (s... [more]
Y1566_DEIGD6.875e-1241.03UPF0161 protein Dgeo_1566 OS=Deinococcus geotherma... [more]
Y1174_HAEI86.875e-1243.06UPF0161 protein NTHI1174 OS=Haemophilus influenzae... [more]
Y1000_HAEIN6.875e-1243.06UPF0161 protein HI1000 OS=Haemophilus influenzae G... [more]
Y003_FUSNN6.875e-1243.33UPF0161 protein FN0003 OS=Fusobacterium nucleatum ... [more]
Y4947_BACC18.980e-1243.55UPF0161 protein BCE_4947 OS=Bacillus cereus (strai... [more]
Y4932_BACC78.980e-1243.55UPF0161 protein BCAH187_A4932 OS=Bacillus cereus (... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937484 ID=CK937484; Name=CK937484; organism=Citrus sinensis; type=EST; length=665bp
AAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAACC
CTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAAT
ATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAAA
ACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGGA
TCCGAACACTCCACAAGAAGGTCTGAGGTCCCCCTCACTCTCTCTTCTCT
CGACAGAAAAAAAAGGGAAAAATTCAATATTTTAACTTCTTGACTCTGAA
ATTTGCTGGGTTTTGGATTTTTAATTAGATGATAAAGAGGTCAATAGTTT
GGGAGTCAGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCT
CGCCACTGATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTAC
TCAATGCAAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGAC
TGCTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGATTTGATC
CTCCTCGATGGTTTGATGAGGAAAGTCCACCTGAAGTATGACAGCATACG
GTCTAATAGCTGCCAAGCAAAATGGTNCNTTTCAGAGTCTTGAGGCTANN
NNTTCAGAGAACAAT
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