CK937484

Overview
NameCK937484
Unique NameCK937484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3218_CUPTR (UPF0161 protein RALTA_A3218 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=RALTA_A3218 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPPRWFDEESP 579
            R  L++L  YK  +SP +   CR++PTCS+Y+  A   +G  +G+ + A RLCRC+P    G+DP    + ++P
Sbjct:    3 RILLALLRVYKIALSPYLGSQCRFLPTCSDYARDAIVHHGAARGSWMAACRLCRCHPFAQGGYDPVPGTEADTP 76          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2358_LACPL (UPF0161 protein lp_2358 OS=Lactobacillus plantarum GN=lp_2358 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP-PRWFDEESPPE 585
            R  +  + FY+R  S   P  CRY PTCS Y+++A  ++G VKG ++   R+ RC PL   GFDP P  F     P+
Sbjct:    3 RLLMKGIRFYQRAFSAFSPAHCRYYPTCSNYTLEAINRFGAVKGVLMGVARILRCQPLVKGGFDPVPAHFSLRRNPQ 79          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2236_DESAP (UPF0161 protein Daud_2236 OS=Desulforudis audaxviator (strain MP104C) GN=Daud_2236 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            + A+ ++  Y+  ISP  P +CR+ PTCSEY++QA  KYG+++G +    R+ RC+P    G+DP
Sbjct:    6 KLAIGLIKGYQVAISPFFPSTCRFYPTCSEYAVQAIGKYGLMRGGLRAVRRVLRCHPFSPGGYDP 70          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y989_XYLFA (UPF0161 protein XF_0989 OS=Xylella fastidiosa GN=XF_0989 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +L  YKR ISPL+   CR+ P+CSEY+M A  ++G ++G  L A RL RC PL   G+DP
Sbjct:   12 LLKIYKRLISPLLGPHCRFEPSCSEYAMGAIARFGTLRGIWLAARRLARCQPLQPGGYDP 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y8C8_BURXL (UPF0161 protein Bxeno_A4428 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A4428 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFD--PP 555
            +++L FYK  +SP++   CR+ P+CS+Y+ +A + +G  +GT L A R+CRC+P    G D  PP
Sbjct:    6 IALLRFYKVAVSPMLGNRCRFYPSCSDYAREAIQYHGAARGTYLAARRICRCHPFSAGGIDLVPP 70          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y528_EXIS2 (UPF0161 protein Exig_0528 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=Exig_0528 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFD-PPRWFDEESP 579
            L  + FY++ ISP+ P +CR+ PTCS Y  +A +K+G ++G  LT  RL RC P    G D  P  FD ++P
Sbjct:    6 LGGIHFYQKVISPMKPATCRFYPTCSHYGKEAIEKHGALRGGYLTTRRLLRCQPFHPGGLDFVPETFDWKAP 77          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4507_ANADF (UPF0161 protein Anae109_4507 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_4507 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            RA + ++  Y+R +SPL+P +CR+ P+CS Y+  A +++G +KG+ L A RL RC+P    G DP
Sbjct:    4 RALVFLVRVYQRLVSPLLPPACRFYPSCSAYAATALERHGALKGSALAARRLLRCHPFHPGGIDP 68          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3987_BURPP (UPF0161 protein Bphyt_3987 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_3987 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFD--PP 555
            +++L FYK  +SP++   CR+ P+CS+Y+ +A + +G  +GT L A R+CRC+P    G D  PP
Sbjct:    6 IALLRFYKVAVSPMLGNRCRFYPSCSDYAREAIQYHGAARGTYLAARRICRCHPFSAGGIDLVPP 70          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3099_BURP8 (UPF0161 protein Bphy_3099 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=Bphy_3099 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  370 SMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFD--PP 555
            ++L FYK  +SP++   CR+ P+CS+Y+ +A + +G  +GT L A RLCRC+P    G D  PP
Sbjct:    7 ALLRFYKIAVSPMLGNRCRFYPSCSDYAREAIQYHGAARGTYLAARRLCRCHPFSAGGIDLVPP 70          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1627_FINM2 (UPF0161 protein FMG_1627 OS=Finegoldia magna (strain ATCC 29328) GN=FMG_1627 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRS-CRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +  + ++ FY++ ISP + +  C+Y PTCS+Y+++A+KK    K   LT WR+ RCNP    G+DP
Sbjct:    3 KVMIFLIKFYQKAISPYLGQGKCKYYPTCSQYALEAFKKKPFFKALGLTIWRILRCNPFSKGGYDP 68          
The following BLAST results are available for this feature:
BLAST of CK937484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
Y3218_CUPTR5.820e-1137.84UPF0161 protein RALTA_A3218 OS=Cupriavidus taiwane... [more]
Y2358_LACPL5.820e-1140.26UPF0161 protein lp_2358 OS=Lactobacillus plantarum... [more]
Y2236_DESAP5.820e-1141.54UPF0161 protein Daud_2236 OS=Desulforudis audaxvia... [more]
Y989_XYLFA7.602e-1150.00UPF0161 protein XF_0989 OS=Xylella fastidiosa GN=X... [more]
Y8C8_BURXL7.602e-1141.54UPF0161 protein Bxeno_A4428 OS=Burkholderia xenovo... [more]
Y528_EXIS27.602e-1143.06UPF0161 protein Exig_0528 OS=Exiguobacterium sibir... [more]
Y4507_ANADF7.602e-1143.08UPF0161 protein Anae109_4507 OS=Anaeromyxobacter s... [more]
Y3987_BURPP7.602e-1141.54UPF0161 protein Bphyt_3987 OS=Burkholderia phytofi... [more]
Y3099_BURP87.602e-1143.75UPF0161 protein Bphy_3099 OS=Burkholderia phymatum... [more]
Y1627_FINM27.602e-1140.91UPF0161 protein FMG_1627 OS=Finegoldia magna (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937484 ID=CK937484; Name=CK937484; organism=Citrus sinensis; type=EST; length=665bp
AAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAACC
CTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAAT
ATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAAA
ACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGGA
TCCGAACACTCCACAAGAAGGTCTGAGGTCCCCCTCACTCTCTCTTCTCT
CGACAGAAAAAAAAGGGAAAAATTCAATATTTTAACTTCTTGACTCTGAA
ATTTGCTGGGTTTTGGATTTTTAATTAGATGATAAAGAGGTCAATAGTTT
GGGAGTCAGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCT
CGCCACTGATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTAC
TCAATGCAAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGAC
TGCTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGATTTGATC
CTCCTCGATGGTTTGATGAGGAAAGTCCACCTGAAGTATGACAGCATACG
GTCTAATAGCTGCCAAGCAAAATGGTNCNTTTCAGAGTCTTGAGGCTANN
NNTTCAGAGAACAAT
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