CK937484

Overview
NameCK937484
Unique NameCK937484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1234_LACGA (UPF0161 protein LGAS_1234 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=LGAS_1234 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP-PRWF 564
            + +++ YK+ ISP++P +CRY PTCS Y + A KK+G + G ++   R+ RCNP    G DP P +F
Sbjct:    6 IGLVNVYKKFISPVLPPTCRYYPTCSTYMIDALKKHGAILGLIMGISRIIRCNPFIKGGVDPVPDYF 72          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y005_CHLTE (UPF0161 protein CT0005 OS=Chlorobium tepidum GN=CT0005 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++ FY+  ISPL+  SC+Y PTCS Y+++A++++     + LT WR+ RCNP    G+DP
Sbjct:    8 LIRFYQSFISPLLGPSCKYHPTCSNYAIEAFRQHNFFYASWLTVWRVLRCNPFSKGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y889_DESVM (UPF0161 protein DvMF_0889 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=DvMF_0889 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  385 YKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            Y+R ISP +P +CRYVPTCS Y+ +A   +GVV+G +L   RL RC+P    G+DP
Sbjct:   16 YQRFISPCLPPACRYVPTCSAYAAEAVLTHGVVRGLLLACRRLLRCHPWCAGGYDP 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y467_PELUB (UPF0161 protein SAR11_0467 OS=Pelagibacter ubique GN=SAR11_0467 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPL----GGSGFDP 552
            + ++ FYK  ISP +  SCRY+PTCSEY+++  + YG+VK    +  R+  C+P+    GG GFDP
Sbjct:    9 IGLIKFYKMVISPYLTPSCRYLPTCSEYTIECLRTYGLVKAISKSTKRIFSCHPIKILGGGEGFDP 74          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3146_CHLAD (UPF0161 protein Cagg_3146 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=Cagg_3146 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            L ++ FY+  ISP  P SC Y PTCS Y  +A +KYG ++G  +T  R+ RC+P    G+DP
Sbjct:    7 LKLIRFYQVAISPWTPPSCIYTPTCSHYGYEAIQKYGALRGGWMTIKRIARCHPFARGGYDP 68          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2031_CHLCH (UPF0161 protein Cag_2031 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_2031 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++  Y+  +SPL+  SC+YVPTCS Y+++A++++       LT WR+ RCNP    G+DP
Sbjct:   14 LIRLYRTFLSPLLGPSCKYVPTCSSYALEAFERHNFFYALWLTIWRILRCNPFSKGGYDP 73          
The following BLAST results are available for this feature:
BLAST of CK937484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
Y1234_LACGA7.602e-1143.28UPF0161 protein LGAS_1234 OS=Lactobacillus gasseri... [more]
Y005_CHLTE7.602e-1143.33UPF0161 protein CT0005 OS=Chlorobium tepidum GN=CT... [more]
Y889_DESVM9.928e-1151.79UPF0161 protein DvMF_0889 OS=Desulfovibrio vulgari... [more]
Y467_PELUB9.928e-1143.94UPF0161 protein SAR11_0467 OS=Pelagibacter ubique ... [more]
Y3146_CHLAD9.928e-1145.16UPF0161 protein Cagg_3146 OS=Chloroflexus aggregan... [more]
Y2031_CHLCH9.928e-1141.67UPF0161 protein Cag_2031 OS=Chlorobium chlorochrom... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937484 ID=CK937484; Name=CK937484; organism=Citrus sinensis; type=EST; length=665bp
AAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAACC
CTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAAT
ATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAAA
ACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGGA
TCCGAACACTCCACAAGAAGGTCTGAGGTCCCCCTCACTCTCTCTTCTCT
CGACAGAAAAAAAAGGGAAAAATTCAATATTTTAACTTCTTGACTCTGAA
ATTTGCTGGGTTTTGGATTTTTAATTAGATGATAAAGAGGTCAATAGTTT
GGGAGTCAGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCT
CGCCACTGATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTAC
TCAATGCAAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGAC
TGCTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGATTTGATC
CTCCTCGATGGTTTGATGAGGAAAGTCCACCTGAAGTATGACAGCATACG
GTCTAATAGCTGCCAAGCAAAATGGTNCNTTTCAGAGTCTTGAGGCTANN
NNTTCAGAGAACAAT
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