CK937484

Overview
NameCK937484
Unique NameCK937484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3875_DEIDV (UPF0161 protein Deide_03875 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=Deide_03875 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  346 SLGVRAALSMLSFYKREISPLMPR-SCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            SL  R  + ++  Y+RE+SP  P  +CR++PTCS+Y+++A +++G +KG  L  WR+ RCNPL   G DP
Sbjct:    2 SLASRGLVRVIRAYQRELSPRKPSPTCRFIPTCSQYAVEAIERHGALKGGWLATWRIMRCNPLVPGGVDP 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2145_PSYA2 (UPF0161 protein Psyc_2145 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=Psyc_2145 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  334 KEVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFD 549
            K +N    +   S + FY++ ISP++P  CRY PTCS Y  QA   YGV  G++L   R+ RC+PLGG G D
Sbjct:    6 KTINKYLYKLIYSFIVFYQKIISPILPARCRYYPTCSNYGKQALAWYGVWNGSLLLLKRIGRCHPLGGHGID 77          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1031_THENN (UPF0161 protein CTN_1031 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=CTN_1031 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            R  + ++ FY++ ISPL P +CR+ PTCS Y +QA +K+G++KG  L   R+ RCNPL   G+DP
Sbjct:    3 RLLIMIVRFYQKYISPLKPPTCRFEPTCSNYFIQALEKHGLLKGLFLGLRRVVRCNPLSKGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y564_THEEB (UPF0161 protein tsr0564 OS=Thermosynechococcus elongatus (strain BP-1) GN=tsr0564 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP-----PRWFDEESPP 582
            +A + ++  Y+R ISPL   +CRY P+CS Y+++A  +YG VKGT L   R+ RC+P    G+DP     P   +E SPP
Sbjct:    7 KALIVLIRIYQRWISPLFLPTCRYTPSCSAYAVEAIARYGAVKGTYLAIRRILRCHPFAVGGYDPVPTTCPDPCNESSPP 86          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y5102_CLOB8 (UPF0161 protein Cbei_5102 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=Cbei_5102 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPPR 558
            + ++ FY++ ISP     CR+VPTCS+Y++ A  KYG  KG+ L  +R+ RCNP    G+DP R
Sbjct:    6 IRLIKFYRKYISPGRSSCCRFVPTCSQYAIDAINKYGAFKGSALAVYRILRCNPFCKGGYDPVR 69          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4697_TRIEI (UPF0161 protein Tery_4697 OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_4697 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++  YK  ISP++P SCR+ PTCSEY+M+A +++G+ KGT +   R+ RC+P    G+DP
Sbjct:    8 LIKGYKIFISPILPPSCRFQPTCSEYAMEAIERFGIFKGTAMAVMRILRCHPFHPGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3882_STRCO (UPF0161 protein SCO3882 OS=Streptomyces coelicolor GN=SCO3882 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNP--LGGSGFDPPR 558
            L+++  Y+  ISPL+   C+Y P+CS Y   A  ++G VKGT LTAWR+ RCNP  LGG    PPR
Sbjct:    6 LALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAVKGTALTAWRILRCNPWSLGGVDHVPPR 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2115_ACTSZ (UPF0161 protein Asuc_2115 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=Asuc_2115 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  343 NSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +SLG +  + ++ FY+  ISPL+   CR+VPTCS Y ++A K +G V+G  LT  R+ +C+PL   G+DP
Sbjct:    5 HSLGEKILIKLIRFYQIVISPLIGPRCRFVPTCSCYGLEAIKTHGAVRGAWLTLKRILKCHPLNAGGYDP 74          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: YIDD_ECOL6 (UPF0161 protein yidD OS=Escherichia coli O6 GN=yidD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  346 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            S G RA ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G DP
Sbjct:    6 SPGSRALIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGGDDP 74          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4515_ANAD2 (UPF0161 protein A2cp1_4515 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_4515 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  355 VRAALSML-SFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +RAAL +L   Y+R +SPL+P +CR+ P+CS Y++ A +++G ++G+ LT  RLCRC+P    G DP
Sbjct:    2 IRAALVLLVRIYQRLVSPLLPPACRFYPSCSAYAVTALQRHGALRGSWLTVRRLCRCHPFHAGGVDP 68          
The following BLAST results are available for this feature:
BLAST of CK937484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
Y3875_DEIDV1.809e-1244.29UPF0161 protein Deide_03875 OS=Deinococcus deserti... [more]
Y2145_PSYA22.363e-1245.83UPF0161 protein Psyc_2145 OS=Psychrobacter arcticu... [more]
Y1031_THENN2.363e-1247.69UPF0161 protein CTN_1031 OS=Thermotoga neapolitana... [more]
Y564_THEEB3.086e-1242.50UPF0161 protein tsr0564 OS=Thermosynechococcus elo... [more]
Y5102_CLOB83.086e-1245.31UPF0161 protein Cbei_5102 OS=Clostridium beijerinc... [more]
Y4697_TRIEI3.086e-1246.67UPF0161 protein Tery_4697 OS=Trichodesmium erythra... [more]
Y3882_STRCO3.086e-1250.00UPF0161 protein SCO3882 OS=Streptomyces coelicolor... [more]
Y2115_ACTSZ3.086e-1244.29UPF0161 protein Asuc_2115 OS=Actinobacillus succin... [more]
YIDD_ECOL64.031e-1244.93UPF0161 protein yidD OS=Escherichia coli O6 GN=yid... [more]
Y4515_ANAD24.031e-1246.27UPF0161 protein A2cp1_4515 OS=Anaeromyxobacter deh... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937484 ID=CK937484; Name=CK937484; organism=Citrus sinensis; type=EST; length=665bp
AAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAACC
CTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAAT
ATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAAA
ACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGGA
TCCGAACACTCCACAAGAAGGTCTGAGGTCCCCCTCACTCTCTCTTCTCT
CGACAGAAAAAAAAGGGAAAAATTCAATATTTTAACTTCTTGACTCTGAA
ATTTGCTGGGTTTTGGATTTTTAATTAGATGATAAAGAGGTCAATAGTTT
GGGAGTCAGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCT
CGCCACTGATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTAC
TCAATGCAAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGAC
TGCTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGATTTGATC
CTCCTCGATGGTTTGATGAGGAAAGTCCACCTGAAGTATGACAGCATACG
GTCTAATAGCTGCCAAGCAAAATGGTNCNTTTCAGAGTCTTGAGGCTANN
NNTTCAGAGAACAAT
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