CK937482

Overview
NameCK937482
Unique NameCK937482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   73 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 369
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   76 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 348
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  112 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 348
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  112 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 360
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  112 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 360
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  115 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 360
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   31 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 354
            EEG V      E + E L+ + E  +LV VDF+A WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  V  +PTF F K  + V +  GA  E+L+++IA+
Sbjct:  443 EEGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  115 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 360
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  115 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 360
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK937482 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  115 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 360
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK937482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_FUSCU8.062e-1441.23Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_ECHGR8.062e-1440.66Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR1.053e-1348.75Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO1_ANASP1.053e-1345.88Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO1.053e-1345.88Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_STAS11.375e-1350.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
TXND2_RAT1.796e-1338.89Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
THIO_STAAW1.796e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU1.796e-1348.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS1.796e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937482 ID=CK937482; Name=CK937482; organism=Citrus sinensis; type=EST; length=604bp
GGGNGGCGGAAAGNNNAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGG
GTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAA
CCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGC
CGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGT
CCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACT
GGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATT
GTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGC
CAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGC
CTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAAT
TTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATAT
TCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAATT
TAATTTCATATTTGTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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