CK937466

Overview
NameCK937466
Unique NameCK937466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937466 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  215 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 490
            D  A S  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K++IK+HGF
Sbjct:   17 DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of CK937466 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.578e-24
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  215 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 490
            D  A     +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K++IK+HGF
Sbjct:   18 DDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CK937466 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.075e-23
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 2
Query:  254 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 490
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CK937466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ASHGO9.249e-2555.43Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_SCHPO1.578e-2458.70Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK5.075e-2358.23Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_C03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937466 ID=CK937466; Name=CK937466; organism=Citrus sinensis; type=EST; length=581bp
GGGGACCAAGAACNNNCTTCAGACTTATACGAATCCGATTTAGGGTTTCT
TTTTGATCTTATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCG
GATCAGGTCTGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTT
CATGTCTGATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTG
ATGCAAAGGCTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATC
CGTGTTCAGCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTT
GAAGAAAGAATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGGAAT
TTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATT
CAACTCCAAGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGC
TGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTCTAAGTAAACA
ACAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGC
AGAACATGCTATTGATACTATTAAAAAAAAA
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