EY665878

Overview
NameEY665878
Unique NameEY665878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665878 vs. ExPASy Swiss-Prot
Match: DOHH_CAEEL (Deoxyhypusine hydroxylase OS=Caenorhabditis elegans GN=tag-242 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:   30 DSSHLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKLQASGSDGSSMTERSPFMSVDPAAPA 359
            D S LL HE A+ LGQMQ+  AIP L +VL D    P+VRH            S   +L+     DP  EV ETC++AL R+E ++ SG D       SP+ SVDP   A
Sbjct:   54 DESALLKHELAYCLGQMQNKHAIPTLVSVLEDEKQEPMVRHEAGEALGAIADPSVKDVLR-KYAQDPCPEVSETCQIALGRVEWVEKSGKD-----TNSPYDSVDPTPSA 157
[Close]
BLAST of EY665878 vs. ExPASy Swiss-Prot
Match: DOHH_SCHPO (Deoxyhypusine hydroxylase OS=Schizosaccharomyces pombe GN=lia1 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.662e-11
Identity = 35/109 (32.11%), Postives = 50/109 (45.87%), Query Frame = 3 
Query:   30 DSSHLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKLQASGSDGSSMTERSPFMSVDPAAP 356
            D S LL HE A+ +GQ     A+  L  ++ND     +VRH             ++P+L+     DP   +RETCELA+ RI+       +   +T       VDPA P
Sbjct:   58 DDSELLKHEMAYVMGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPLAPIRETCELAIARIQWKNGLDKNNEKITPSMYDSVVDPAPP 166

HSP 2 Score: 25.409 bits (54), Expect = 5.662e-11
Identity = 12/46 (26.09%), Postives = 24/46 (52.17%), Query Frame = 1 
Query:  391 LLGEDKGMYDPYAALFRSSPPGGDEAVSATMTPYRALTALLNHEVA 528
            ++ ++  ++  Y  +FR    G +EAV A    ++  + L  HE+A
Sbjct:  185 IVDQNLPLFYRYRVMFRLRNIGNEEAVLALTDGFKDPSPLFRHEIA 230
The following BLAST results are available for this feature:
BLAST of EY665878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DOHH_CAEEL4.152e-1341.82Deoxyhypusine hydroxylase OS=Caenorhabditis elegan... [more]
DOHH_SCHPO5.662e-1132.11Deoxyhypusine hydroxylase OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665878 ID=EY665878; Name=EY665878; organism=Citrus sinensis; type=EST; length=835bp
CCATATTGGAATTGGCCCCTTGGAGAAAGGATTCTTCACATTTGTTGGCA
CATGAAGCTGCATTTGCCTTGGGTCAAATGCAAGATGCTGAAGCTATCCC
TGCTCTGGAAGCTGTTCTGAACGACTTTTCTTTGCATCCCATTGTTCGCC
ATGAGGCAGCGGAAGCTCTTGGCGCAATTGGTTTAGAGAGCAATATTCCC
TTGCTAAAGAATAGTCTAGTTTCAGATCCAGCTCAGGAGGTTCGAGAAAC
ATGTGAACTAGCACTTGAGAGAATTGAGAAATTACAGGCATCTGGTAGTG
ACGGATCATCCATGACAGAAAGGTCACCATTTATGTCTGTTGACCCAGCT
GCACCAGCTTCATCCTGTTCTTCTGTTGATATGCTAAGTTCTTCTGGGTG
AAGACAAAGGCATGTATGACCCATATGCCGCTCTTTTTCGCTCTTCCCCC
CCTGGCGGCGATGAAGCTGTTTCCGCTACTATGACCCCCTACCGCGCACT
CACTGCTCTACTGAACCATGAAGTTGCCCATGCGCTCCTCCCATCGAAAA
AAAAGCTAGTCTCCTCTGGCCCTTCCCCACACCGCTAGCGACCGCACCAA
CCCCCCCCCCCTGACTCCTCACGGGCCGCCCACCTCCGGCATCCCCACCC
AAGCCATAGAAACTCAGGCGCTCCCCAGCGTCCCTCCCTCATGCCTACCA
CCCCTACACGTTCCCCCCCCCCCCTCGCTGCGCGCGCCCAACCTACCCTC
CCCCCACCTCACTCCTCCCCCACCACACATCCGTACCCCCTCCACCCCGA
CCACACGACGCCCTAACACACCTAACTGCTGCAAG
back to top