CK937438

Overview
NameCK937438
Unique NameCK937438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:8..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.281e-49
Identity = 106/199 (53.27%), Postives = 136/199 (68.34%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            DP  LQD CVA  D    V VNG  CK+P    ++DFF +     P NT N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPH+HPRA+E+  VLEGTLYVGFVTS+   N L +KV++KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  +FG+ P I+ D L KAFQ++ K++  L+++F
Sbjct:   25 DPSPLQDFCVA--DMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQF 219          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 104/199 (52.26%), Postives = 134/199 (67.34%), Query Frame = 2
Query:  128 DPGHLQDVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 721
            DP  LQDVCVA     K  + +NG  CK  +   A DFFF GL K GNT N +G   T A+VE +PGLNT+G+S  RIDYAP+G  PPH HPRA+EI  V+EG+L VGFVT+    N L  + + KG+VFVFP+GL+HFQ N G T A A +ALNSQ PG  +IA  +FGA P +  D L +AFQ+D  +V+ +++KF+
Sbjct:   24 DPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTT---ANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFV 219          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.731e-46
Identity = 104/193 (53.89%), Postives = 125/193 (64.77%), Query Frame = 2
Query:  140 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            LQDVCVA  D  + V VNG  CKD      EDF+F GL     T    G   T ANVE++PGLNTLG+S  RIDYAP G  PPH+HPRASEI  VLEG LYVGFVT+      LIAK LNKGDVF FP+GLIHFQ NI  + A+  +A +SQ PG  ++  ++FGA P    D L K+FQL  K VK ++ ++
Sbjct:   25 LQDVCVA--DLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTT---AGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALPD---DILAKSFQLKHKQVKKIKLRY 209          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.260e-46
Identity = 102/198 (51.52%), Postives = 127/198 (64.14%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            DP  LQD+CVA  D   G+ VNG  CK      A DFFF+G+GKP    N +G   T ANVE+I GLNTLG+S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L AK + KG+VFVFP+GLIH+Q N  K   A+  SA NSQ PG  +IA T+F A P+I    L   FQ+  K ++ +++KF
Sbjct:   23 DPDTLQDLCVA--DRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITT---ANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKF 215          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.952e-46
Identity = 100/198 (50.51%), Postives = 126/198 (63.64%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            D   LQD CVA  D  +G+ VNG  CKDP     EDF+F GL     TAN  +G   T ANVE++PGLNTLG+S  RIDYAP G  PPH+HPRASE   VLEG L+VGF+T+      LI+K +NKGDVFVFP+ L+HFQ N  K  A+  +A +SQ PG   +  ++FG+NP I  D L KAF      ++ ++ KF
Sbjct:   23 DTNMLQDFCVA--DLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIKGKF 215          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 101/196 (51.53%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNK 715
            DP  LQD+CVA  D    V VNG  CK       +DF+F GL   GNT N  G   T ANVE++PGLNTLG+S  RIDYAP G  PPH HPRA+E+  VL+GTL VGF+T+    N L  K ++ GDVFVFP+GL+HFQ N G T AA  SA NSQ PG  ++A T+F A+P +    L KAFQ+  K V+ ++++
Sbjct:   27 DPDLLQDICVA--DLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITT---ANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSR 215          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.577e-46
Identity = 102/197 (51.78%), Postives = 129/197 (65.48%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            D   LQDVCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N GK  AA  SA NSQ PG  +I  T+FGA+P++  D L + FQ++ + V+ +++KF
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT---ANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKF 223          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.122e-45
Identity = 96/196 (48.98%), Postives = 125/196 (63.78%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNK 715
            DP  LQD+CVA  D   G  +NG  CK+       DFFF+G+ KP    + +G   T ANVE+IPGLNTL +S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L  K +  G+VFVFP+GL+HFQ N GK+ A+  SA NSQ PG  ++A T+F A P++  D L K FQ+  K+V  ++ +
Sbjct:   24 DPDALQDLCVA--DKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITT---ANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKER 214          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.122e-45
Identity = 103/197 (52.28%), Postives = 124/197 (62.94%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            DP  LQDVCVA  D    V +NG  CK      A+DFFF+GL  PGNT N  G + T ANV+  PG+NTLG+S  RIDYAP GQ PPH HPRA+EI  VLEG L VGF+T+    N L  K +  G+VFVFP+GL+HFQ N G   AA  +A NSQ  G   IA T+F A P +  D L KAF++D   V  ++ KF
Sbjct:   26 DPDMLQDVCVA--DLASPVKLNGFPCKAN--VTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITT---ANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKF 215          
BLAST of CK937438 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.568e-45
Identity = 101/197 (51.27%), Postives = 128/197 (64.97%), Query Frame = 2
Query:  128 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 718
            D   LQDVCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N G+  AA  SA NSQ PG  +I  T+FGA+P +  D L + FQ++ + V+ +++KF
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT---ANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKF 223          
The following BLAST results are available for this feature:
BLAST of CK937438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL83_ORYSJ1.281e-4953.27Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL13_ORYSJ1.084e-4852.26Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL25_ARATH1.731e-4653.89Probable germin-like protein subfamily 2 member 5 ... [more]
GL24_ARATH2.260e-4651.52Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL23_ARATH2.952e-4650.51Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL52_ORYSJ3.856e-4651.53Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICPL6.577e-4651.78Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL22_ARATH1.122e-4548.98Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL11_ORYSJ1.122e-4552.28Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS5.568e-4551.27Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_F11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937438 ID=CK937438; Name=CK937438; organism=Citrus sinensis; type=EST; length=728bp
GGGGAATCACAACANNNGATTAAAGTTTGAGATAGGCACATCCTGTGACT
TAATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCT
TTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGCCATCTTCAAGATGT
CTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGT
TCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGG
CTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACAGA
TGCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCAT
TCCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCC
CGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTT
TGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATA
AGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAAC
ATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTCCC
GGGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATCA
ATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAA
GATCTTCAAAATAAGTTCATTAATGGCA
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