CK937376

Overview
NameCK937376
Unique NameCK937376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.429e-20
Identity = 79/271 (29.15%), Postives = 123/271 (45.39%), Query Frame = 2
Query:  176 SIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKL--------------AGSTLPIVLLDDEKTTSTEGIKTVTTLP--QMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGGF--KLEDGE-QTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            ++F SK   + +P +  L    F  +         I AATGR  TF+E        +  L  +G+  G  +++L  N + F V   A   LGA+ T  NP  T QEI KQ   S   L  T S  V KL                 TL ++ +DD++ T  EG      LP   ++     G++    I+ DD   L +SSGTTG  KGVV +HR++++ V   + G    L  G     +C +P+FHI+ L +     + +G+ + ++ +
Sbjct:   26 TVFRSKLPDIDIPSHLPLHEYCFARAAELPDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAASFLGAVTTAANPFCTPQEIHKQFKASGVKLILTQSVYVDKLRQHEAFPRIDACTVGDDTLTVITIDDDEAT-PEG-----CLPFWDLIADADEGSVPEVAISPDDPVALPFSSGTTGLPKGVVLTHRSVVSGVAQQVDGENPNLHMGAGDVALCVLPLFHIFSLNSVLLCAVRAGAAVALMPR 290          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.172e-20
Identity = 71/254 (27.95%), Postives = 112/254 (44.09%), Query Frame = 2
Query:  179 IFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGGFKLE---DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            IF SK   + +P +  L    F +    + R   ID A  R  T++E+      V+  L+ +GI++   I++L PN   F    +    LGAI T  NPL T  E+ KQ   S   +  T +      AG      + +D K    + +         + +     +   +I  DDV  L YSSGTTG  KGV+ +H+ L+  V   + G         +   +C +P+FHIY L +     L  G+ I+++ K
Sbjct:   14 IFRSKLPDIYIPKHLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQA----CFAGKVKDYAIENDLKVICVDSVPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQK 263          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.066e-20
Identity = 77/261 (29.50%), Postives = 118/261 (45.21%), Query Frame = 2
Query:  179 IFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGST----LPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGG------FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            +F SK   + +P + +L    F        R   ID  TG   ++ E+       +  L  +G+ KG V++ L  N   F    L    LGA  TT NP  T  EI +Q + +   +  T +  V K+ G      +P+V +D +     +G   V     M+          + ++ DDV  L YSSGTTG  KGV+ +HR+L+  V   + G      F+ ED     +C +P+FHIY L +     L +GS IV++ K
Sbjct:   18 VFRSKLPDIEIPSHLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRGFAADRGIPVVAVDGD----FDG--CVGFGEAMLDASIEPLDADEEVHPDDVVALPYSSGTTGLPKGVMLTHRSLVTSVAQQVDGENPNLYFRRED---VVLCLLPLFHIYSLNSVLLAGLRAGSAIVIMRK 269          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.229e-20
Identity = 70/265 (26.42%), Postives = 117/265 (44.15%), Query Frame = 2
Query:  167 KSNSIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKL-------AGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGGFKLE---DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            +++ +F SK   + +  +  L    F +      R   I     +  T+++       ++  LS++GI KG V+++L  NS  F    LA+  +GA+ TT NP  T  EI KQ   SK  L  T +  V KL        G    +V +DD                 ++ +     +    I+ DD   + +SSGTTG  KGV+ +H++L   V   + G         E   +C +P+FHI+ L +     L +GS ++++ K
Sbjct:   22 QTSHVFKSKLPDIPISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHDGAKLGEDFKVVTVDDPPENCLHF--------SVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQK 278          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.205e-19
Identity = 78/261 (29.89%), Postives = 116/261 (44.44%), Query Frame = 2
Query:  179 IFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKL----AGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGG------FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            +F SK   + +  + +L    F        R   ID  TG   T++E+  A    +  L  MG+ KG V++ L  N   F    L    LGA  TT NP  T  E+ +Q   +   +  T +  V K+    A   +P+V +D       E  + V    ++             ++ DDV  L YSSGTTG  KGV+ +HR+LI  V   + G      F  +D     +C +P+FHIY L +     L +GSTIV++ K
Sbjct:   11 VFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAERGVPVVTVDGAFDGCVE-FREVLAAEELDADAD--------VHPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLYFSKDD---VILCLLPLFHIYSLNSVLLAGLRAGSTIVIMRK 259          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.614e-18
Identity = 74/258 (28.68%), Postives = 115/258 (44.57%), Query Frame = 2
Query:  179 IFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGGFKLE---DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            IF SK   + +P +  L    F +      R   I+ A  +  T++++      V+  L   GI+    I++L PNS  F    +    LGAI T  NPL T  E+ KQ   S   +  T +  V K+      + + I+ +D    ++ EG    + L Q    +    +    I  DDV  L YSSGTTG  KGV+ +H+ L+  V   + G         E   +C +P+FHIY L +     L  G+ I+++ K
Sbjct:   11 IFRSKLPDIYIPNHLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICID----SAPEGCLHFSVLTQANEHD----IPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQK 260          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.473e-17
Identity = 74/275 (26.91%), Postives = 129/275 (46.91%), Query Frame = 2
Query:  185 YSKRKPVSLP-PNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPK-LAGSTLPIV--------------------LLDDEKTTSTEGIKT--VTTLPQMMRKEPSGTLVRDRINQD-DVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGG-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK 931
            Y    P  LP PN++L      S+     +TA   +  G+ LTF ++      ++  L   G++KG  + ++ PN     +    V+  G I+  TNPL T+ E+  Q+ D++  +  T+  L PK +   TL IV                     L  ++    +  KT  + T    M++E +  L   +I+ + D+A L Y+ GTTGA KGV+ +H+N++A  +      + +++G +  +  VP FH+YGL A     +  G  +++L K
Sbjct:   11 YPNDIPHELPLPNKTLQSILTDSAARFPDKTAI--SFYGKKLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPNCPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKIDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYGLTAVMNYSIKLGFEMILLPK 283          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.247e-16
Identity = 58/216 (26.85%), Postives = 103/216 (47.69%), Query Frame = 2
Query:  305 LTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVP--KLAGSTLPIVLL--------DDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGGFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVV 922
            +T+ EL   +   +  L + G+ KG  + LL  NS  F +     +  G ++   NPL T  EI   + +        +SQL+P  +    +LP V L         + +    E    +TT  +++R   +    ++ +  DD A +LY+SGTTG  KG + +H+NL +    V G   +++ +   +C +PMFH++ L       L SG+T+++
Sbjct:   27 MTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPV-PDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNV-VCALPMFHVFCLTVCMNAPLMSGATVLI 240          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 63/259 (24.32%), Postives = 116/259 (44.79%), Query Frame = 2
Query:  194 RKPVSLPPNESLDVTTFISSRAHHGRTAFIDAAT----GRHLTFSELWRAVDSVSTCLSD-MGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPV-------LAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTL------------------VRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG--GFKLEDGEQTFICTVPMFHIYGL 874
            R P  +P   + D    +     H  T + D       G  +TF +L     + +  L   +G++KG  + L+ PN + +PV    ++  G I+   NPL T +E+  Q+ DS           A T+ ++V K +   + +  + D+ +T+ +G      +  + R  P   L                  V+  +  +D+A L Y+ GTTG +KG + +HRN++A ++ V    G  L  G++  +  +P++HI+ L
Sbjct:    8 RYPADVPAEINPDRYQSLVELFEHAATRYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAAAIIIVSNFAHTLEKVVEKTSVQHVILTRMGDQLSTA-KGTVVNFVVKYIKRLVPKYHLPDAISFRSALQHGYRMQYVKPEVVAEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVKATYGPLLHPGKELVVTALPLYHIFAL 265          
BLAST of CK937376 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 63/259 (24.32%), Postives = 116/259 (44.79%), Query Frame = 2
Query:  194 RKPVSLPPNESLDVTTFISSRAHHGRTAFIDAAT----GRHLTFSELWRAVDSVSTCLSD-MGIRKGHVILLLSPNSIFFPVVCLAVMPLGAIITTTNPLNTKQEIAKQIADSKPV-------LAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTL------------------VRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG--GFKLEDGEQTFICTVPMFHIYGL 874
            R P  +P   + D    +     H  T + D       G  +TF +L     + +  L   +G++KG  + L+ PN + +PV    ++  G I+   NPL T +E+  Q+ DS           A T+ ++V K +   + +  + D+ +T+ +G      +  + R  P   L                  V+  +  +D+A L Y+ GTTG +KG + +HRN++A ++ V    G  L  G++  +  +P++HI+ L
Sbjct:    8 RYPADVPAEINPDRYQSLVELFEHAATRYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAAAIIIVSNFAHTLEKVVEKTSVQHVILTRMGDQLSTA-KGTVVNFVVKYIKRLVPKYHLPDAISFRSALQHGYRMQYVKPEVVAEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVKATYGPLLHPGKELVVTALPLYHIFAL 265          
The following BLAST results are available for this feature:
BLAST of CK937376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
4CL2_ORYSJ2.429e-2029.15Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL1_SOLTU3.172e-2027.954-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL4_ORYSJ7.066e-2029.50Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL2_SOYBN9.229e-2026.424-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL3_ORYSJ1.205e-1929.89Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL2_TOBAC6.614e-1828.684-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
LCFA_BACSU1.473e-1726.91Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LCFB_BACSU1.247e-1626.85Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LCFA_SALTY3.072e-1524.32Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI3.072e-1524.32Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004510_E11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937376 ID=CK937376; Name=CK937376; organism=Citrus sinensis; type=EST; length=932bp
GCGGGGAAAACTTTCCATTTTAAATTACACCANNNGCAGCCTTAGCTCAA
ATCAAAGTCCACGTTATACAAACGAAAACCTTTGATCAGGGAGACGAAAC
ATGAGAGGCGTTCGATCGGCTACGATGGCATCAAACACTAGAATCGATTC
AAGAAGTGGATTCTGCAAATCAAATTCCATCTTCTACAGCAAACGCAAGC
CAGTTTCACTCCCACCAAACGAGTCTCTAGACGTGACGACATTCATCTCC
TCGCGGGCCCATCATGGCAGAACCGCCTTCATCGACGCGGCCACGGGCCG
CCACCTCACCTTCTCCGAGCTCTGGCGAGCGGTTGATTCGGTCTCCACGT
GCCTCTCCGATATGGGAATCAGAAAAGGTCATGTCATCCTCCTCCTTTCC
CCTAATTCAATTTTCTTTCCTGTCGTCTGTCTCGCTGTCATGCCACTCGG
TGCCATTATCACCACGACTAATCCTCTCAACACCAAACAAGAAATCGCCA
AGCAAATCGCTGATTCGAAACCTGTCCTCGCCTTCACCATTAGCCAACTC
GTCCCAAAACTCGCCGGTTCAACGCTTCCAATCGTACTCCTTGACGATGA
GAAGACCACTTCAACTGAAGGCATCAAAACTGTAACTACTTTACCGCAGA
TGATGCGAAAGGAGCCAAGCGGGACCCTTGTTAGAGATCGAATCAACCAA
GACGACGTCGCAACACTCCTCTACTCGTCTGGCACAACAGGCGCTAGTAA
AGGTGTCGTATCGTCACACCGTAATCTGATAGCAATGGTGCAGACCGTTT
TGGGGGGATTTAAGTTAGAGGACGGCGAGCAAACTTTCATCTGCACTGTT
CCTATGTTTCACATCTACGGCTTAGCAGCGTTCGCCACGGGCCTCTTGGC
ATCAGGATCAACGATCGTGGTTCTCTCAAAAT
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