CK937343

Overview
NameCK937343
Unique NameCK937343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 59/212 (27.83%), Postives = 91/212 (42.92%), Query Frame = 2
Query:  245 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 817
            IAEF+ T L ++     +  L V G S    + S +   G+A A        +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 59/212 (27.83%), Postives = 91/212 (42.92%), Query Frame = 2
Query:  245 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 817
            IAEF+ T L ++     +  L V G S    + S +   G+A A        +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 59/212 (27.83%), Postives = 91/212 (42.92%), Query Frame = 2
Query:  245 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 817
            IAEF+ T L ++     +  L V G S    + S +   G+A A        +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 64/213 (30.05%), Postives = 95/213 (44.60%), Query Frame = 2
Query:  200 FEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG--ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVFSA-TDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 817
            +EPG L      RA   E + TFLF++I V + +   K+            A A    +   V  TAG  +SGGH+NPAVT  L +   ++L R+  Y+  Q  G+     +++          L GGA    H    G     G+ AE + TF L+  + +   D +R A     P+L  L +G       +A   +TG  +NPARS G A+
Sbjct:   18 WEPGCL------RAVAGELLFTFLFVFIGVASTITAGKAAGGAGEAAAVTAA-AMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLR---------CLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFGPAL 210          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 59/211 (27.96%), Postives = 95/211 (45.02%), Query Frame = 2
Query:  194 PLFEPGELKSWS--FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 820
            PL +   L S S  F +  +AE + T+ FL       + V+  + K  T  + GIA  +G  +  LVY    ISG H NPAVT       +  L +   Y++ Q +G+   A  ++   G  + +   G  +V       G  L + +I   +  Y +F  +    + R   +  LA L +G  V L  +   P++G  +NP RSLG A++
Sbjct:   36 PLKKQDSLLSISVPFLQKLMAEVLGTY-FLIFAGCAAVAVNTQHDKAVT--LPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFG-LDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAMV 240          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 56/214 (26.17%), Postives = 96/214 (44.86%), Query Frame = 2
Query:  227 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVK--------GFEGSKNYERLGGGANVVAHGYTK--------GDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 820
            S +   +AEF+ T L ++     V  +  +    ++ G+  I+  +G  +   +Y +AG+SG H+NPAV+  L L       +  FY+  Q  GA C A +V          FE ++N  R    +  +A  ++         G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G  ++
Sbjct:    9 SLFGQCLAEFLGTALLIFFGTGCVAALKVAG---ASFGLWEISIIWGVGVSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRGP---LAPLLIGLLIAVIGSAMGPLTGFAMNPARDFGPKLM 216          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 62/201 (30.85%), Postives = 85/201 (42.29%), Query Frame = 2
Query:  248 AEFMATFLFLY-------ITVLTVMGVSKSNTKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 808
            AE + TF+ ++       IT++   G  K N     +G  G       I  AF   I A++Y    ISG HINPAVT  L    +      V Y+V Q +GA  G+ +     G       G GA     G   G  +  E IGTF+L+  +      +R       P  A L IG  V  +      ITG+ +NPAR+ G
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 56/191 (29.32%), Postives = 84/191 (43.98%), Query Frame = 2
Query:  248 AEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 817
            AEF+ TF+ ++      +   K     S  G    A   G  +  ++  T  ISG H+NP++T      R     +   Y+ +Q LG++C    +KG      +  L GG  V     +       E I TF L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG A+
Sbjct:   87 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVTTIILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQVLGSICAGFALKGV----FHPFLSGGVTVPDPTISTAQAFFTEFIITFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAV 264          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 61/201 (30.35%), Postives = 85/201 (42.29%), Query Frame = 2
Query:  221 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 820
            S  F +  IAE + TF FL       + V+K      TV   GI   +G  +  +VY    ISG H+NPAVT       +    R   Y   Q  G+   +  ++   G       G      A   +    L  E I TF L++ V   ATD +       +  LA L +G  V +  L   PI+G  +NPAR++G AII
Sbjct:   49 SVQFAQKVIAEILGTF-FLIFAGCAAVAVNKRTG--GTVTFPGICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFG-----TAPAGSDVQSLAMEFIITFYLMFVVSGVATDNRA------IGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAII 235          
BLAST of CK937343 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 56/198 (28.28%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  230 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 820
            F +  IAE   T+  ++        V+ + +K   +   G+A  +G  +  +VY    ISG H NPAVT     + +    +   Y++ Q LGA   +G ++   G + +E   G    +  G ++   L  EII TF L++ +   ATD +       +  LA L +G  + L  L   P++G  +NPARS+G A++
Sbjct:   42 FIQKIIAEIFGTYFLMFAGC---GAVTINASKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGR-HEHFPG---TLPTG-SEVQSLVIEIITTFYLMFVISGVATDNRA------IGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALV 225          
The following BLAST results are available for this feature:
BLAST of CK937343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
GLPF_ECOLI1.539e-1227.83Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL61.539e-1227.83Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO571.539e-1227.83Glycerol uptake facilitator protein OS=Escherichia... [more]
TIP42_ORYSJ2.010e-1230.05Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
NIP12_ARATH4.477e-1227.96Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
GLPF_PSEAE4.477e-1226.17Glycerol uptake facilitator protein OS=Pseudomonas... [more]
AQPM_ARCFU4.477e-1230.85Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NIP31_ORYSJ5.848e-1229.32Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
NIP13_ORYSJ5.848e-1230.35Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP11_MAIZE5.848e-1228.28Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_B06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937343 ID=CK937343; Name=CK937343; organism=Citrus sinensis; type=EST; length=822bp
GGGGGCTACGCTACATACACAACACAAACACAGCATCTTCTTTGAGAGAA
TAAGGGAGCGAGAGAGAGGTTCATCATCGTCAATGGAGGGCAAAGAAGAG
GATGTTAAGCTAGGAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGAC
ATCAGCTCAATCAGACAAAGACTACAAGGAGCCACCACCAGCACCTTTGT
TTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCA
GAGTTCATGGCTACCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCAT
GGGTGTCTCTAAGTCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAA
TTGCTTGGGCCTTTGGTGGCATGATCTTTGCGCTTGTTTACTGCACTGCT
GGTATCTCAGGAGGACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCT
AGCGAGGAAGCTTTCCCTGACAAGGGCTGTCTTCTACATGGTCATGCAGT
GCCTTGGTGCTGTCTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCA
AAGAACTACGAGAGGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTA
CACCAAGGGTGATGGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTG
TTTACACTGTCTTCTCTGCCACTGATGCGAAGAGAAACGCCAGAGACTCT
CATGTCCCTATTTTGGCCCCCCTCCCCATTGGATTTGCTGTTTTCTTGGT
CCACCTGGCCACCATCCCCATCACAGGAACTGGCATCAACCCAGCTAGGA
GTCTTGGAGCTGCCATCATCTT
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