CK937295

Overview
NameCK937295
Unique NameCK937295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   85 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            +AITCGQV + L  C+ + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC +VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   58 CIPVTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 354
            C+ V AP   AITCG V + LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C
Sbjct:   16 CMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNC 113          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   79 ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            A  AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   22 AAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   79 ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            A  AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   22 AAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   58 CIPVTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            C+  +A   +AI+CGQVT+ L PC  +L  GG  PP  CC+GVR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DC ++
Sbjct:   15 CMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   58 CIPVTAP-ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P A  A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   19 CMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC +V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   58 CIPVTAPATN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P T+  A++CG V ++LA CI ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   14 CMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            AI+CGQV++++ PC+ + R  G  P   C SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DC RV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 56/105 (53.33%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   58 CIPVTAP-ATNAITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V AP A  AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   16 CLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
The following BLAST results are available for this feature:
BLAST of CK937295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
SCA_LILLO1.766e-2353.19Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_BETVU1.766e-2352.53Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_ORYSJ1.766e-2355.79Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.766e-2355.79Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP_GERHY2.306e-2350.00Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_PRUDU2.306e-2352.83Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_HORVU3.933e-2352.17Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP1_ARATH3.933e-2351.85Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_ELECO1.952e-2253.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP6_GOSHI4.349e-2253.33Non-specific lipid-transfer protein 6 OS=Gossypium... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937295 ID=CK937295; Name=CK937295; organism=Citrus sinensis; type=EST; length=584bp
AAGCCTCCTTGAAGANNNNNNNNNGCTGCTCTTAAACTTGTTTGTGCTTT
GCTTTTGTGCATTCCGGTGACTGCCCCGGCGACTAATGCCATAACATGCG
GGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAAC
GAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTT
CCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGA
CTGCTATAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTT
GTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTT
TGAGTGATTAATTATAGTTATTTTGTGGTATTAT
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