CK937295

Overview
NameCK937295
Unique NameCK937295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   58 CIPVTAPATN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   14 CMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   91 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            ++CG V   LAPCI +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   58 CIPVTAP-ATNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P ATNA ++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   14 CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   58 CIPVTAPATN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   14 CMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   58 CIPVTAP-ATNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P ATNA ++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   14 CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 55/105 (52.38%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   58 CIPVTAP-ATNA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P ATNA ++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   14 CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   91 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   58 CIPVTAPAT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C  V+
Sbjct:   14 CMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   79 ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            A  AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DC ++
Sbjct:   23 ADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
The following BLAST results are available for this feature:
BLAST of CK937295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTPD_BRAOT7.418e-2250.48Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP5_VITSX1.265e-2152.75Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_BRANA3.681e-2153.33Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP2_BRANA3.681e-2150.48Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT8.201e-2152.38Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_BRANA1.071e-2052.38Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP3_VITSX1.399e-2051.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTPA_BRAOT1.827e-2046.79Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP8_HORVU4.070e-2048.42Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP_AMACA5.316e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937295 ID=CK937295; Name=CK937295; organism=Citrus sinensis; type=EST; length=584bp
AAGCCTCCTTGAAGANNNNNNNNNGCTGCTCTTAAACTTGTTTGTGCTTT
GCTTTTGTGCATTCCGGTGACTGCCCCGGCGACTAATGCCATAACATGCG
GGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAAC
GAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTT
CCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGA
CTGCTATAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTT
GTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTT
TGAGTGATTAATTATAGTTATTTTGTGGTATTAT
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