CK937295

Overview
NameCK937295
Unique NameCK937295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   67 VTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            V   A+ A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   22 VAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   67 VTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            V   A+ A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   22 VAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   61 IPVTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 354
            I + +P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C
Sbjct:   16 IYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 354
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNC 112          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   79 ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            A  A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DC R+
Sbjct:   23 AAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 354
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   58 CIPVTAPATN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ VTAP  +  AI+CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C  VR
Sbjct:   14 CMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   64 PVTAPATNAITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDC 354
            P+TA A  A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C
Sbjct:   20 PITAKA--ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKC 118          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   58 CIPVTAPAT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            C+ V  P T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C  VR
Sbjct:   14 CMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CK937295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_AMAHP5.316e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_ORYSJ2.020e-1942.42Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.020e-1942.42Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH4.500e-1946.94Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HELAN1.309e-1844.94Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP1_HORVU2.233e-1844.21Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTPB_ARATH1.108e-1749.44Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH1.448e-1750.00Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP7_ARATH1.891e-1745.54Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP2_ARATH1.891e-1749.06Non-specific lipid-transfer protein 2 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004511_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937295 ID=CK937295; Name=CK937295; organism=Citrus sinensis; type=EST; length=584bp
AAGCCTCCTTGAAGANNNNNNNNNGCTGCTCTTAAACTTGTTTGTGCTTT
GCTTTTGTGCATTCCGGTGACTGCCCCGGCGACTAATGCCATAACATGCG
GGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAAC
GAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTT
CCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGA
CTGCTATAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTT
GTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTT
TGAGTGATTAATTATAGTTATTTTGTGGTATTAT
back to top