CK937295

Overview
NameCK937295
Unique NameCK937295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   91 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   79 ATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            A  AI CG V + + PC+ +++ GG  P   CC GV++L+  AR+  DRQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DC RV
Sbjct:   20 AAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   85 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            +AI+C  V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC  V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCYRVR 366
            AI+C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C  ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   88 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDC 354
            A++C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDC 109          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   76 PATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCYRV 363
            P   AI+C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DC +V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   91 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCYRV 363
            + CGQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C+ +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 1
Query:   64 PVTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCYRVR 366
            P  APA     CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DC +++
Sbjct:   24 PAPAPAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   64 PVTAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDC 354
            P  AP +   TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC
Sbjct:   30 PAPAPGSEE-TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
BLAST of CK937295 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1
Query:   70 TAPATNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCYRV 363
            +APA     CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DC ++
Sbjct:   26 SAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
The following BLAST results are available for this feature:
BLAST of CK937295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTPA_RICCO4.212e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP1_WHEAT2.730e-1643.16Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP8_ARATH3.566e-1640.86Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPA_ARATH1.037e-1541.05Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH1.355e-1544.57Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA5.693e-1440.21Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO1.656e-1338.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU3.124e-1232.35Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU1.187e-1135.00Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT22_PARJU5.891e-1132.32Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937295 ID=CK937295; Name=CK937295; organism=Citrus sinensis; type=EST; length=584bp
AAGCCTCCTTGAAGANNNNNNNNNGCTGCTCTTAAACTTGTTTGTGCTTT
GCTTTTGTGCATTCCGGTGACTGCCCCGGCGACTAATGCCATAACATGCG
GGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAAC
GAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTT
CCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGA
CTGCTATAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTT
GTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTT
TGAGTGATTAATTATAGTTATTTTGTGGTATTAT
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