CK937280 | Citrus Genome Database

Overview


Name	CK937280
Unique Name	CK937280
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	600

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_BOMBU (Maturase K OS=Bombax buonopozense GN=matK PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 8.833e-82
Identity = 145/198 (73.23%), Postives = 172/198 (86.87%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER YFYGK+E+LVEVF  DFQ+ LGL KDPF+H++RYQGK+ILASKDTPLLMNKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIYFYGKIEYLVEVFYNDFQNNLGLFKDPFIHFIRYQGKTILASKDTPLLMNKWKYYFVDLWQYYFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_CARPA (Maturase K OS=Carica papaya GN=matK PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.356e-81
Identity = 146/198 (73.74%), Postives = 166/198 (83.84%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STSF VL+ER  FYGK+EHL++VF  DFQDIL LVKDPFMHY+RYQGKSILASKDTPLLMNKWKYY V LWQ HF+  SQ  RV++  L   K  ++FLGY S +R N L+VRSQMLENSFLIDN++KK DT +PII +IGSL KARFCNALGHPISK  W+D +DS +IDRFVRICRNLSHYYSGSSKKK
Sbjct:  229 NQSSHLRSTSFGVLLERILFYGKIEHLIKVFVNDFQDILWLVKDPFMHYIRYQGKSILASKDTPLLMNKWKYYFVSLWQCHFYVWSQSRRVRIKQL--SKDYLDFLGYFSSLRFNPLVVRSQMLENSFLIDNAIKKFDTKIPIIPMIGSLAKARFCNALGHPISKPAWADSADSDIIDRFVRICRNLSHYYSGSSKKK 424

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_SAPSA (Maturase K OS=Sapindus saponaria GN=matK PE=3 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 4.384e-81
Identity = 149/198 (75.25%), Postives = 167/198 (84.34%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+ TS  VL+ER +FYGKV++LVEVFA  FQDIL L KD FMHYVRYQGK+ILASKDTPLLMNKWK Y V LWQWHFH  SQPGRV +NHL+  K +INFLGYLS  R N L+VRSQMLEN+FLIDN+MKK +T VPII +I SLTKARFCN LG+PISK TW+D SD H+I RFVRICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRLTSSGVLLERIHFYGKVDYLVEVFANGFQDILRLYKDLFMHYVRYQGKAILASKDTPLLMNKWKNYFVNLWQWHFHVWSQPGRVHINHLH--KDSINFLGYLSSRRQNPLVVRSQMLENAFLIDNAMKKFETAVPIIPMIESLTKARFCNPLGNPISKPTWADSSDCHIIGRFVRICRNLSHYHSGSSKKK 423

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_CUPAN (Maturase K OS=Cupaniopsis anacardioides GN=matK PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.176e-80
Identity = 146/198 (73.74%), Postives = 166/198 (83.84%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+ TS  VL+ER +FYGKV++ VEVFA  FQDIL L KD FMHYVRYQGK+ILASKDTPLLMNKWKYY V LWQWHFH  SQP R  +NHL+  K +INFLGYLS  R N L+VRSQMLEN++LIDN+MKK +T VPII ++ SLTKARFCN LG+PISK  W+D SDSH+IDRFVRICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRLTSSGVLLERIHFYGKVDYFVEVFANGFQDILWLYKDLFMHYVRYQGKAILASKDTPLLMNKWKYYFVNLWQWHFHVWSQPVRAHINHLH--KDSINFLGYLSSRRRNPLVVRSQMLENAYLIDNAMKKFETAVPIIPMVESLTKARFCNPLGNPISKPIWADSSDSHIIDRFVRICRNLSHYHSGSSKKK 423

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ADADI (Maturase K OS=Adansonia digitata GN=matK PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.841e-80
Identity = 143/198 (72.22%), Postives = 170/198 (85.86%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER YFYGK+E+L+EVF  DFQ+ L L KDPF+H++RYQGK+ILASKDT LLMNKWKYY V LWQ+HF+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIYFYGKIEYLLEVFYNDFQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYHFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_TILAM (Maturase K OS=Tilia americana GN=matK PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 6.330e-80
Identity = 143/198 (72.22%), Postives = 170/198 (85.86%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER YFYGK+E+LVEVF  DFQ+ L L KDPF+H++RYQGK+ILASKDT LLMNKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIYFYGKIEYLVEVFYNDFQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYYFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_THECC (Maturase K OS=Theobroma cacao GN=matK PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.842e-79
Identity = 142/198 (71.72%), Postives = 169/198 (85.35%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER YFYGK+E+LVEVF  DFQ+ L L KDPF+H++RYQGK+ILASKDT LLMNKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLE+SF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIYFYGKIEYLVEVFCNDFQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYYFYVWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLESSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWXDSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_OCHPY (Maturase K OS=Ochroma pyramidale GN=matK PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.842e-79
Identity = 142/198 (71.72%), Postives = 169/198 (85.35%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS    +ER YFYGK+E+LVEVF  DFQ+ L L KDPF+H++RYQGK+ILASKDT LLMNKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGAFLERIYFYGKIEYLVEVFYNDFQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYYFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_FRECA (Maturase K OS=Fremontodendron californicum GN=matK PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.842e-79
Identity = 142/198 (71.72%), Postives = 170/198 (85.86%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER +FYGK+E+LVEVF  DFQ+ L L KDPF+H++RYQGK+ILASKDT LLMNKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIFFYGKIEYLVEVFYNDFQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYYFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNTMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_PACAQ (Maturase K OS=Pachira aquatica GN=matK PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.103e-79
Identity = 141/198 (71.21%), Postives = 169/198 (85.35%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER YFYGK+++LVEVF+ DFQ+ L L KDPF H++RYQGK+ILASKDT LLMNKWKYY V LWQ++F+  SQ GR ++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIYFYGKIDYLVEVFSNDFQNNLWLFKDPFTHFIRYQGKAILASKDTSLLMNKWKYYFVDLWQYYFYMWSQSGRFRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGSSKKK 420

The following BLAST results are available for this feature:

BLAST of CK937280 vs. ExPASy Swiss-Prot

BLAST of CK937280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
MATK_BOMBU	8.833e-82	73.23	Maturase K OS=Bombax buonopozense GN=matK PE=3 SV=...	[more]
MATK_CARPA	3.356e-81	73.74	Maturase K OS=Carica papaya GN=matK PE=3 SV=1	[more]
MATK_SAPSA	4.384e-81	75.25	Maturase K OS=Sapindus saponaria GN=matK PE=3 SV=2	[more]
MATK_CUPAN	2.176e-80	73.74	Maturase K OS=Cupaniopsis anacardioides GN=matK PE...	[more]
MATK_ADADI	2.841e-80	72.22	Maturase K OS=Adansonia digitata GN=matK PE=3 SV=1	[more]
MATK_TILAM	6.330e-80	72.22	Maturase K OS=Tilia americana GN=matK PE=3 SV=1	[more]
MATK_THECC	1.842e-79	71.72	Maturase K OS=Theobroma cacao GN=matK PE=3 SV=1	[more]
MATK_OCHPY	1.842e-79	71.72	Maturase K OS=Ochroma pyramidale GN=matK PE=3 SV=1	[more]
MATK_FRECA	1.842e-79	71.72	Maturase K OS=Fremontodendron californicum GN=matK...	[more]
MATK_PACAQ	4.103e-79	71.21	Maturase K OS=Pachira aquatica GN=matK PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004512_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_A12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937280 ID=CK937280; Name=CK937280; organism=Citrus sinensis; type=EST; length=600bp
GGGGTAACCAATCGTCTCATTTACAATCAACATCCTTTCAAGTCCTCGTT
GAGCGAACGTATTTCTATGGAAAAGTCGAACATCTTGTCGAAGTCTTTGC
TAAAGATTTTCAGGACATCTTAGGGTTGGTCAAGGATCCTTTCATGCATT
ATGTTAGATATCAAGGAAAATCCATTTTGGCTTCAAAGGATACGCCTCTT
CTGATGAATAAATGGAAATATTACCTTGTCGGTTTATGGCAATGGCATTT
TCACGCGTCTTCTCAACCAGGAAGGGTTCAGCTAAACCACTTATACTTAG
GCAAGTACGCTATTAACTTTCTGGGCTATCTTTCCGGTGTGCGACTAAAT
TCTTTGTTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGATAA
TTCTATGAAGAAGGTCGATACGACCGTTCCAATTATTCATCTGATTGGAT
CATTGACTAAGGCGCGGTTTTGTAACGCATTAGGGCATCCTATCAGTAAG
TCGACTTGGTCCGATTTCTCTGATTCTCATCTTATCGACCGATTTGTGCG
TATATGTAGAAATCTTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAA