CK937280

Overview
NameCK937280
Unique NameCK937280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_NICAL (Maturase K OS=Nicotiana alata GN=matK PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.752e-75
Identity = 141/198 (71.21%), Postives = 156/198 (78.79%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STSF  L+ER YFYGK+E LVEVFAKDFQ  L L KDPFMHYVRYQGKSILASK T LLMNKWK+YLV  WQ HF      GR+ +N L    ++ +F+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGSSKKK
Sbjct:  232 NQSSHLRSTSFGALLERIYFYGKIERLVEVFAKDFQVTLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNHSRDFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGSSKKK 427          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_NICGU (Maturase K OS=Nicotiana glutinosa GN=matK PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.594e-75
Identity = 140/198 (70.71%), Postives = 157/198 (79.29%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STSF  L+ER YFYGK+E LVEVFAKDFQ  L L KDPFMHYVRYQGKSILASK T LLMNKWK+YLV  WQ HF+     GR+ +N L    ++ +F+GYLS VRLN  ++RSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGSSKKK
Sbjct:  232 NQSSHLRSTSFGALLERIYFYGKIERLVEVFAKDFQVTLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKFYLVNFWQCHFYLCFPTGRIHINQL--SNHSRDFMGYLSSVRLNPSMLRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGSSKKK 427          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_NICAC (Maturase K OS=Nicotiana acuminata GN=matK PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.594e-75
Identity = 140/198 (70.71%), Postives = 156/198 (78.79%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STSF  L+ER YFYGK+E LVEVFAKDFQ  L L KDPFMHYVRYQGKSILASK T LLMNKWK+YLV  WQ HF+     GR+ +N L    ++ +F+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VPII LIGSL K  FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGSSKKK
Sbjct:  232 NQSSHLRSTSFGALLERIYFYGKIERLVEVFAKDFQVTLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKFYLVNFWQCHFYLCFHTGRIHINQL--SNHSRDFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKGNFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGSSKKK 427          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_GOSSC (Maturase K OS=Gossypium schwendimanii GN=matK PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.594e-75
Identity = 136/198 (68.69%), Postives = 166/198 (83.84%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER +FYGK+++L EVF  DFQ+ L L KDPF+H++RYQGKSILASKDT LL+NKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSFLIDN++K +DT +PII +IGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIFFYGKIKYLGEVFYNDFQNNLWLFKDPFIHFIRYQGKSILASKDTSLLINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFLIDNAVKTLDTRIPIISIIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGSSKKK 420          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_GOSGO (Maturase K OS=Gossypium gossypioides GN=matK PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.594e-75
Identity = 136/198 (68.69%), Postives = 166/198 (83.84%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER +FYGK+++L EVF  DFQ+ L L KDPF+H++RYQGKSILASKDT LL+NKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSFLIDN++K +DT +PII +IGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIFFYGKIKYLGEVFYNDFQNNLWLFKDPFIHFIRYQGKSILASKDTSLLINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFLIDNAVKTLDTRIPIISIIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGSSKKK 420          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_SOPJA (Maturase K OS=Sophora japonica GN=matK PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 4.694e-75
Identity = 134/198 (67.68%), Postives = 159/198 (80.30%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            N+S+HL+ TSF VL ER YFY K+EHLVEVFAKDF   L   KDPF+HYVRYQGKSILASK+ PLLMNKWKYYL+ LWQ+HF+  SQPG + +N   L +++ +FLGY S VR+N   VRSQMLENSF+I+  MKK+DT VPII LI SL KA+FCN LGHPISK  W+  SD ++IDRF+RICRNLSHYY+GSSKKK
Sbjct:  228 NKSAHLRLTSFSVLFERIYFYAKIEHLVEVFAKDFSSTLSFFKDPFIHYVRYQGKSILASKNAPLLMNKWKYYLIHLWQYHFYVWSQPGTIHINQ--LSEHSFHFLGYFSNVRINLSAVRSQMLENSFIIEIGMKKLDTIVPIIPLIRSLAKAKFCNVLGHPISKPVWAYSSDFYIIDRFLRICRNLSHYYNGSSKKK 423          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_BETPA (Maturase K OS=Betula papyrifera GN=matK PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 8.007e-75
Identity = 138/198 (69.70%), Postives = 161/198 (81.31%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQS+HL+ TS  VL ER Y + K+E LVEVF  DFQ IL  +KDPF+HYVRYQGKSILASKDTPLLMNKWKYYLV LWQ HF   S+PGR+ +N L   K++++FLGY S V LN  +VRSQMLENSF+I+N+ KK+DT V II LIGSL KA+FCNALGHPISK TW+D SD  +I+RFVRIC+NLSHYYSGSSKKK
Sbjct:  227 NQSNHLRLTSSGVLFERIYLHRKMEDLVEVFVNDFQGILCFLKDPFIHYVRYQGKSILASKDTPLLMNKWKYYLVSLWQCHFFVWSRPGRIYINQL--SKHSLDFLGYFSSVPLNPSMVRSQMLENSFIINNAPKKLDTIVTIIPLIGSLAKAKFCNALGHPISKPTWADLSDFDIINRFVRICKNLSHYYSGSSKKK 422          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_GOSBA (Maturase K OS=Gossypium barbadense GN=matK PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.366e-74
Identity = 135/198 (68.18%), Postives = 166/198 (83.84%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  V +ER +FYGK+++L EVF  DFQ+ L L KDPF+H++RYQGKSIL+SKDT LL+NKWKYY V LWQ++F+  SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQ+LENSFLIDN++K +DT +PII LIGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSSGVFLERIFFYGKIKYLGEVFYNDFQNNLWLFKDPFIHFIRYQGKSILSSKDTSLLINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQVLENSFLIDNAVKTLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGSSKKK 420          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_EHRAN (Maturase K OS=Ehretia anacua GN=matK PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.366e-74
Identity = 137/198 (69.19%), Postives = 162/198 (81.82%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STSF  L+ER YFYGK+E LVEVFAKDFQ  L L KDPF+HYVRYQGK ILASK TPLLMNKWKYYLV  WQ +F+  S+PGR+ +N   L  ++++F+GYLS VRLN  +VRSQMLEN+FL++N +KK DT +PII LIGSL KA+FCN LG+PISK   +D SDS +IDRF RICRNLSHY+SGSSKKK
Sbjct:  225 NQSSHLRSTSFGALLERIYFYGKIERLVEVFAKDFQATLWLFKDPFIHYVRYQGKLILASKGTPLLMNKWKYYLVNFWQCYFYLWSRPGRIYINQ--LSNHSLDFMGYLSSVRLNPSMVRSQMLENAFLVNNVIKKFDTLLPIIPLIGSLAKAKFCNILGNPISKPVRADLSDSDIIDRFGRICRNLSHYHSGSSKKK 420          
BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACTCH (Maturase K OS=Actinidia chinensis GN=matK PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.366e-74
Identity = 137/197 (69.54%), Postives = 157/197 (79.70%), Query Frame = 3
Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKK 596
            NQ SHL+S S    +ER YFYGK+EH V+VF KDFQDIL L KDPFMHYVRYQGKSILASK T LLMNKWKYYLV  WQ +F+   QPGR+Q+N   L  ++++FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII LIGSL KA+FCN LGHP+SK  W+D SDS +IDRF RI RNLSHY+SGS KK
Sbjct:  227 NQXSHLRSISSGTFLERIYFYGKIEHFVKVFTKDFQDILWLFKDPFMHYVRYQGKSILASKGTSLLMNKWKYYLVNFWQCYFYMWCQPGRIQINQ--LSNHSLDFLGYLSSVRLNPSMVRSQMLENSFLIGNAIKKFDTIVPIIPLIGSLYKAKFCNVLGHPVSKPVWADLSDSDIIDRFGRIYRNLSHYHSGSLKK 421          
The following BLAST results are available for this feature:
BLAST of CK937280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_NICAL2.752e-7571.21Maturase K OS=Nicotiana alata GN=matK PE=3 SV=1[more]
MATK_NICGU3.594e-7570.71Maturase K OS=Nicotiana glutinosa GN=matK PE=3 SV=... [more]
MATK_NICAC3.594e-7570.71Maturase K OS=Nicotiana acuminata GN=matK PE=3 SV=... [more]
MATK_GOSSC3.594e-7568.69Maturase K OS=Gossypium schwendimanii GN=matK PE=3... [more]
MATK_GOSGO3.594e-7568.69Maturase K OS=Gossypium gossypioides GN=matK PE=3 ... [more]
MATK_SOPJA4.694e-7567.68Maturase K OS=Sophora japonica GN=matK PE=3 SV=1[more]
MATK_BETPA8.007e-7569.70Maturase K OS=Betula papyrifera GN=matK PE=3 SV=1[more]
MATK_GOSBA1.366e-7468.18Maturase K OS=Gossypium barbadense GN=matK PE=3 SV... [more]
MATK_EHRAN1.366e-7469.19Maturase K OS=Ehretia anacua GN=matK PE=3 SV=1[more]
MATK_ACTCH1.366e-7469.54Maturase K OS=Actinidia chinensis GN=matK PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004512_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937280 ID=CK937280; Name=CK937280; organism=Citrus sinensis; type=EST; length=600bp
GGGGTAACCAATCGTCTCATTTACAATCAACATCCTTTCAAGTCCTCGTT
GAGCGAACGTATTTCTATGGAAAAGTCGAACATCTTGTCGAAGTCTTTGC
TAAAGATTTTCAGGACATCTTAGGGTTGGTCAAGGATCCTTTCATGCATT
ATGTTAGATATCAAGGAAAATCCATTTTGGCTTCAAAGGATACGCCTCTT
CTGATGAATAAATGGAAATATTACCTTGTCGGTTTATGGCAATGGCATTT
TCACGCGTCTTCTCAACCAGGAAGGGTTCAGCTAAACCACTTATACTTAG
GCAAGTACGCTATTAACTTTCTGGGCTATCTTTCCGGTGTGCGACTAAAT
TCTTTGTTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGATAA
TTCTATGAAGAAGGTCGATACGACCGTTCCAATTATTCATCTGATTGGAT
CATTGACTAAGGCGCGGTTTTGTAACGCATTAGGGCATCCTATCAGTAAG
TCGACTTGGTCCGATTTCTCTGATTCTCATCTTATCGACCGATTTGTGCG
TATATGTAGAAATCTTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAA
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