EY665863

Overview
NameEY665863
Unique NameEY665863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B2_BOVIN (Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 2 
Query:  392 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGNLS 601
            K  T P D RFP  NQTR+C+  +++YHRC+     +G+    C+ + + Y +LCP  W+++W EQ ++G  +
Sbjct:   13 KWPTPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKEQIKDGTFA 85
[Close]
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_TARSY (Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  398 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  W+  W+++R  G
Sbjct:   13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEG 80
[Close]
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_MOUSE (Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  398 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +TAP D RFP  NQT++C+  Y+++HRC   + AKG     C+ + + Y++LCP  W+  W+++   G
Sbjct:   13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWDDRIAEG 80
The following BLAST results are available for this feature:
BLAST of EY665863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CX6B2_BOVIN3.695e-1236.99Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=... [more]
CX6B1_TARSY3.695e-1241.18Cytochrome c oxidase subunit 6B1 OS=Tarsius syrich... [more]
CX6B1_MOUSE6.968e-1138.24Cytochrome c oxidase subunit 6B1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665863 ID=EY665863; Name=EY665863; organism=Citrus sinensis; type=EST; length=862bp
CAGCTGAAGAAAGTAGATCGCTTTTTGCCCATCAATGGCGGAAGCCCAAA
GCGACAAAACTCCCTCCCTAGCCGAGGATTATTTGTTGGAAAAAGAGAAG
CAAGATGTAGCTACAAAACCTGTGGTAGTAAAAGAAGTTGAGAGTGCAGT
GACTGCCTCTTCTGTGGAAGGTGCCACTGATAAAGTTGAAGAAACACCTG
CTGCCGCCGCTGTTGAAGAAAGCAAAGAAGACGCCCCTGCTCCTGCCGCT
GAAGAAAGCACTGAAGCCAGTTCTGCTTCTCCTGAGGACAGCACTAGTGA
TACGGCTCCAGCTGCTGCTGAGGAAAGCAGTGAAACTACGGAAGAGGAAA
ACTCAGGTGATCAGGAAGCCTCAGAAGAGACACCAGAAATAAAGCTGGAG
ACTGCACCGGCAGATTTCCGTTTCCCAACCACAAATCAAACAAGGCACTG
CTTTACCCGATATATTGAGTATCATCGGTGTGTAGCTGCTAAGGGAGAGG
GTGCTCCAGAGTGTGATAAGTTTGCAAAATATTACCGTGCTCTGTGCCCT
AGTGACTGGATAGAAAAATGGAATGAGCAAAGAGAAAACGGGAACCTTTC
CCGGTCCTCTGTAGGTGGGTGCCATTTTTACGAACTTGGGTGTGATTCGC
CATCCTCGGTTAAATTAAAGTTGCTACTCCAAATCCAAAGGAGTAATTTC
TTGAATGGGAAGTGGTTTCTCAGGGATCTTTTCCTAAAATCAAGGAGTTA
ATAATTTTTTTTTTGAATTGCCCTAATAAATGGTTGGTCCAAGGTCCCCA
TTACCCCGGGGTTATCTCTCTTCCTTAAAAAAGAATTTTTTTTTTCCCTC
CAACACCCCCAC
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