CN187093

Overview
NameCN187093
Unique NameCN187093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.691e-81
Identity = 144/227 (63.44%), Postives = 187/227 (82.38%), Query Frame = -3
Query:  136 GVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 816
            GV+I++GKED L+T+NLV G +VY EKR++V  E G KVEYR+WN +RSKLAA ++ G +NI ++PG++VLYLGA+SGTTVSHVSDIVG +GVVYAVEFS RSGRDL+NM+ KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA YFLK GG   +SIKANC++S VPAE VF  EV  L++   +P EQVTLEPFE+DHA ++G +++   ++
Sbjct:   57 GVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYRVWNAYRSKLAAGIVCGAENIHMEPGSKVLYLGASSGTTVSHVSDIVGKDGVVYAVEFSERSGRDLINMSMKRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNAQYFLKEGGGVDVSIKANCVNSAVPAETVFADEVNILRKNSIRPKEQVTLEPFEKDHAMIIGRFKLSASEE 282          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.503e-80
Identity = 151/229 (65.94%), Postives = 182/229 (79.48%), Query Frame = -3
Query:  136 GVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG--TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 816
            GVFI+K K D+L T N+V G +VY EKRI +    G   K EYR+WNP+RSKLA+A+  GV +I + PG++VLYLG A+GTTVSHVSD+VGP G+VYAVEFSHR GRDLV M+K+R  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA  FL+ GGH+VISIKANCIDST+ A  V  SE+ KL++++ KP EQV+LEPFERDHA VVG YR  KK K
Sbjct:   69 GVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAIYAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVEMSKRRP-IVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANCIDSTLEAPVVIASELNKLKKDKLKPLEQVSLEPFERDHAVVVGVYRPVKKSK 296          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.460e-73
Identity = 144/222 (64.86%), Postives = 173/222 (77.93%), Query Frame = -3
Query:  151 GVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRM 816
            G+FI+ G+ D LVTK+L  G AVY EKRISV+  + +K+EYR WNPFRSKL AAV   V ++ IKPGA+VLYLGAASGTTVSHVSDIVGP G VYAVEFS RSGRDL+ +AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA Y+LKA G  +ISIKA+ +DST+  EAVF  E++ L++  FK  EQ+ +  F R+HA VVG +R+
Sbjct:  104 GIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYREWNPFRSKLGAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVAKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISIKASSVDSTLKPEAVFAREIETLREHDFKCKEQLDIGEFHRNHAIVVGRFRV 324          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53
Identity = 114/216 (52.78%), Postives = 147/216 (68.06%), Query Frame = -3
Query:  166 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 813
            VFI +   + + TKNLV G+ VY E+ I  + E     EYR+WNP RSKL AA+L G+ +  IKPG+ VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+ EV+K     F+  E+++LEP+E+DHA  V
Sbjct:   13 VFIDEDGSEKIATKNLVPGQKVYGERLIKFEGE-----EYRVWNPRRSKLGAAILNGLKHFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEQVFK-EVEKELATYFEVVERLSLEPYEKDHALFV 222          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.157e-52
Identity = 110/208 (52.88%), Postives = 145/208 (69.71%), Query Frame = -3
Query:  166 DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 789
            + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKLAAA+L  + N  IKPG  VLYLG ASGTT SHVSDI+G  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +ISIK+  ID T   E VF+ EV+K   E F+  E+++LEP+E+DHA +V
Sbjct:   21 ERIATKNLVPGQKVYGERIVKWKGE-----EYRIWNPNRSKLAAAILNDLKNFPIKPGTTVLYLGIASGTTASHVSDIIGWEGKIFGIEFSPRVLRELVPLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKSGGYGMISIKSRSIDVTKEPEEVFR-EVEKELSEYFEVVERISLEPYEKDHALIV 222          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.974e-52
Identity = 114/219 (52.05%), Postives = 148/219 (67.58%), Query Frame = -3
Query:  166 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 816
            GV+I    +  + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKL AA+L G+ N  IKPG+ VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +IS+K+  ID T   E VF+ EV+K     F+  E+++LEP+E+DHA  V
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGE-----EYRIWNPTRSKLGAAILNGLKNFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVYLKSGGYGMISVKSRSIDVTKEPEQVFK-EVEKELSTYFEVVERLSLEPYEKDHALFV 222          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 114/219 (52.05%), Postives = 148/219 (67.58%), Query Frame = -3
Query:  166 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 816
            GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA+L G+ N  IKPG+ VLYLG ASGTT SHVSDIVG  G ++ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+ EV++     F+  E+++LEP+E+DHA  V
Sbjct:   10 GVYIVIDDDGSEKIATKNLVPGQRVYGERVIKFEGE-----EYRIWNPSRSKLGAAILNGLKNFPIKPGSTVLYLGIASGTTASHVSDIVGWEGKIFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEEVFK-EVERELASYFEVVERLSLEPYEKDHALFV 222          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52
Identity = 112/216 (51.85%), Postives = 144/216 (66.67%), Query Frame = -3
Query:  166 VFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 813
            V I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV++   E F+  E++ LEP+E+DHA  V
Sbjct:   14 VVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFK-EVERELSEYFEVIERLNLEPYEKDHALFV 223          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAB (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus abyssi GN=flpA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.671e-51
Identity = 110/219 (50.23%), Postives = 146/219 (66.67%), Query Frame = -3
Query:  166 GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 816
            GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSD++G  G ++ +EFS R  R+LV + + R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV+K   E F+  E++ LEP+E+DHA  V
Sbjct:   11 GVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_PYRHO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus horikoshii GN=flpA PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.850e-51
Identity = 108/208 (51.92%), Postives = 142/208 (68.27%), Query Frame = -3
Query:  166 DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 789
            + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV++   E F+  E++ LEP+E+DHA  V
Sbjct:   22 ERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFR-EVERELSEYFEVIERLNLEPYEKDHALFV 223          
The following BLAST results are available for this feature:
BLAST of CN187093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL_ENCCU7.691e-8163.44rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_LEIMA8.503e-8065.94rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FBRL_GIALA3.460e-7364.86rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FLPA_THEON5.195e-5352.78Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM1.157e-5252.88Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRKO1.974e-5252.05Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEGJ3.367e-5252.05Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU5.744e-5251.85Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAB1.671e-5150.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRHO2.850e-5151.92Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187093 ID=CN187093; Name=CN187093; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTCAACAAACATAACAAGGTCAGATAGCACAAAATTGTTCATTCA
TCCCTTTTAGCTATTACAAAATCAACAACTCCAGCATTAATGTCTGGATA
CAACAAAATGGTGGATGTCCGATGATGGTCTAAGCCTTCTGTTTCTTCGG
CATACGGTAGCCACCAACAACACAGGCGTGGTCTCGCTCAAAGGGCTCGA
GTGTCACTTGCTCAAAGGGTTTGAACTGCTCCTGTTGCAGCTTCTTAACT
TCACTCTGGAACACTGCCTCAGCAGGAACAGTGGAATCTATGCAGTTTGC
CTTGATAGAAATAACAAAATGACCTCCAGCTTTGAGAAAATATGATGCAT
TCAGGGCTAAAATCCTCGCCTGATCCGGTTGGGCAACGTCAGAAAATATT
ACATCTACCATACCGACCAACATACGGTACTTGGCAGGATGTCTAGCATC
TTCAATTATGGGTATAACATTAGTTCTCTTCTTTGCCATATTGACCAAGT
CTCTACCACTTCTATGAGAAAATTCCACTGCATAAACTACTCCATTAGGG
CCAACAATGTCAGAAACATGAGAGACAGTTGTGCCGGAAGCAGCACCAAG
GTATAGAACCCTAGCACCAGGTTTAATCCAAATATTATCAACACCACCAA
GAACAGCTGCAGCTAATTTGGAACGGAAGGGATTCCAAATTCTATACTCA
ACTTTGGTTCCATCTTCATTCTGGACGGAGATCCTCTTCTCATTGTATAC
AGCCTCACCCGCGACGAGATTCTTAGTGACAAGGGCGTCTTCTTTGCCCT
TGGCAATGAACACTCCTT
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