CN187093

Overview
NameCN187093
Unique NameCN187093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALSA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarium GN=flpA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = -3
Query:  166 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 798
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   DL+ +A  R  + P+++DAR P  Y  +V   VD I  DVA   QA + AL+   FL   G  V ++KA   D T    AVF+  + +L ++ ++      +EPF  DH  VV
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDHLAVV 206          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = -3
Query:  166 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 798
            G ED ++      GE  Y E  +     DG    +R W+  RSKL A    G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R   DL+ +A  R  + P+++DAR P  Y  +V   VD I  DVA   QA + AL+   FL   G  V ++KA   D T    AVF+  + +L ++ ++      +EPF  DH  VV
Sbjct:   13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDHLAVV 206          
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 76/199 (38.19%), Postives = 104/199 (52.26%), Query Frame = -3
Query:  166 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 759
            G  VY E R    + DG    +R+W+  RSKL A     ++   +  G  +LYLGAASGTTVSHV+D  GP    YA+EF+ R  RDL+ +A  R N+IP++ DAR P  Y  +V   ++ +  DVA   QA + AL    FL   G  ++ IKA   D     E VF + +  L++       Q  L+ F  DH  VV
Sbjct:   26 GTTVYGEPR----DTDG----WRLWDAGRSKLGAMFKLDIET-GLTGGESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATV-ALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLREGYIIQTRQ-RLDRFHDDHLAVV 210          
The following BLAST results are available for this feature:
BLAST of CN187093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_HALSA6.617e-2438.68Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALS36.617e-2438.68Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALWD2.129e-2238.19Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187093 ID=CN187093; Name=CN187093; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTCAACAAACATAACAAGGTCAGATAGCACAAAATTGTTCATTCA
TCCCTTTTAGCTATTACAAAATCAACAACTCCAGCATTAATGTCTGGATA
CAACAAAATGGTGGATGTCCGATGATGGTCTAAGCCTTCTGTTTCTTCGG
CATACGGTAGCCACCAACAACACAGGCGTGGTCTCGCTCAAAGGGCTCGA
GTGTCACTTGCTCAAAGGGTTTGAACTGCTCCTGTTGCAGCTTCTTAACT
TCACTCTGGAACACTGCCTCAGCAGGAACAGTGGAATCTATGCAGTTTGC
CTTGATAGAAATAACAAAATGACCTCCAGCTTTGAGAAAATATGATGCAT
TCAGGGCTAAAATCCTCGCCTGATCCGGTTGGGCAACGTCAGAAAATATT
ACATCTACCATACCGACCAACATACGGTACTTGGCAGGATGTCTAGCATC
TTCAATTATGGGTATAACATTAGTTCTCTTCTTTGCCATATTGACCAAGT
CTCTACCACTTCTATGAGAAAATTCCACTGCATAAACTACTCCATTAGGG
CCAACAATGTCAGAAACATGAGAGACAGTTGTGCCGGAAGCAGCACCAAG
GTATAGAACCCTAGCACCAGGTTTAATCCAAATATTATCAACACCACCAA
GAACAGCTGCAGCTAATTTGGAACGGAAGGGATTCCAAATTCTATACTCA
ACTTTGGTTCCATCTTCATTCTGGACGGAGATCCTCTTCTCATTGTATAC
AGCCTCACCCGCGACGAGATTCTTAGTGACAAGGGCGTCTTCTTTGCCCT
TGGCAATGAACACTCCTT
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