CN187093
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALSA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarium GN=flpA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24 Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = -3 Query: 166 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 798 G ED ++ GE Y E + DG +R W+ RSKL A G+D + G VLYLGAA+GTTVSHV+D GP YAVEF+ R DL+ +A R + P+++DAR P Y +V VD I DVA QA + AL+ FL G V ++KA D T AVF+ + +L ++ ++ +EPF DH VV Sbjct: 13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDHLAVV 206
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALS3 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=flpA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24 Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = -3 Query: 166 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 798 G ED ++ GE Y E + DG +R W+ RSKL A G+D + G VLYLGAA+GTTVSHV+D GP YAVEF+ R DL+ +A R + P+++DAR P Y +V VD I DVA QA + AL+ FL G V ++KA D T AVF+ + +L ++ ++ +EPF DH VV Sbjct: 13 GDEDGVLATR---GEPAYGEPVV-----DG----WRRWDAHRSKLGATFELGLDT-GLSGGDAVLYLGAANGTTVSHVADFAGP---TYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPETYAHVVESGVDAIVQDVATRGQADV-ALSNRQFLADDGRLVAALKARSEDVTADPAAVFEDLLGRL-RDGYEVRATARMEPFHEDHLAVV 206
BLAST of CN187093 vs. ExPASy Swiss-Prot
Match: FLPA_HALWD (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=flpA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22 Identity = 76/199 (38.19%), Postives = 104/199 (52.26%), Query Frame = -3 Query: 166 GEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-VDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVV 759 G VY E R + DG +R+W+ RSKL A ++ + G +LYLGAASGTTVSHV+D GP YA+EF+ R RDL+ +A R N+IP++ DAR P Y +V ++ + DVA QA + AL FL G ++ IKA D E VF + + L++ Q L+ F DH VV Sbjct: 26 GTTVYGEPR----DTDG----WRLWDAGRSKLGAMFKLDIET-GLTGGESILYLGAASGTTVSHVADFAGPT---YAIEFAPRPVRDLLEVATTRPNLIPLLCDARQPETYAHVVETDIEYLIQDVATRGQATV-ALRNRQFLAPDGKLILMIKARSEDVLSDPEDVFDTIISTLREGYIIQTRQ-RLDRFHDDHLAVV 210 The following BLAST results are available for this feature:
BLAST of CN187093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187093 ID=CN187093; Name=CN187093; organism=Citrus sinensis; type=EST; length=818bpback to top |