CN187090

Overview
NameCN187090
Unique NameCN187090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 40/48 (83.33%), Postives = 47/48 (97.92%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLY
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 40/48 (83.33%), Postives = 47/48 (97.92%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLY
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LY
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LY
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LY
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LY
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LY
Sbjct:    8 IKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA I+FS +GKLY
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  275 LGGVRNVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVA 544
            LGGV++  A   N  E + LARFAV EHN K N+ L+F           +G ++  T+E  EGG KKL+EAKVWEK W  FK+L+EF P A
Sbjct:   17 LGGVQDAPAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPAA 107          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  284 QQTMATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFN 562
            QQ    +GGVR+++A AN+ ++ +LARFAVDEHNK +N  L++           +GT++ +T+E  +G   K++EAKV EK W   K+L+ FN
Sbjct:    4 QQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFN 96          
The following BLAST results are available for this feature:
BLAST of CN187090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
MAD18_ORYSJ2.314e-1683.33MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.314e-1683.33MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AG_TOBAC2.314e-1685.42Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY2.314e-1685.42Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_BRANA2.314e-1685.42Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH2.314e-1685.42Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL11_ARATH2.314e-1685.42Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD15_ORYSJ3.022e-1685.42MADS-box transcription factor 15 OS=Oryza sativa s... [more]
CYT1_HORVU3.022e-1648.35Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
CYT1_ARATH3.022e-1641.94Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187090 ID=CN187090; Name=CN187090; organism=Citrus sinensis; type=EST; length=705bp
AGTCTTGTATATATATTAAACACCAAAGGTCATTTCAATTATTTTTCACA
CAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGACA
CATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATTT
ATTTTTATAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTCT
CTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAAG
CTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAACT
CCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTTC
TTCTGACCTCCTTCAACAGCCTCCAAGGTGATGTCGTACAGAGTCCCTGA
AACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAAT
TCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGATC
TCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAGC
CATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTT
TGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTC
TTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTG
TACGA
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