CN187090

Overview
NameCN187090
Unique NameCN187090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLH 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3
Query:  278 LGGVRNVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNPV 544
            +GG+ +  A   N    V LARFAV EHN K N+ L+             G ++ +T+E  E GG  KL+EAKVWE+ W  FK+L++F P+
Sbjct:   56 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 146          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  557 LLKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+ GKLY
Sbjct:    7 VIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 700
            +KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+
Sbjct:    8 IKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKM 54          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLH 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+
Sbjct:    8 IRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLF 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY
Sbjct:    8 IKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL 700
            +KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL
Sbjct:    8 IKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKL 54          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            ++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+
Sbjct:    8 VRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLF 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            +KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +
Sbjct:    8 IKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYH 55          
The following BLAST results are available for this feature:
BLAST of CN187090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
MADS1_PETHY1.314e-1166.67Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
CYT2_ORYSJ1.314e-1140.66Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]
AGL21_ARATH1.314e-1165.31Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
PIST_ARATH1.716e-1170.21Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
DEFA_ANTMA1.716e-1166.67Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
SVP_ARATH2.927e-1168.75MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD23_ORYSJ2.927e-1164.58MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD22_ORYSJ2.927e-1172.34MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD20_ORYSJ2.927e-1162.50MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD16_ORYSJ2.927e-1164.58MADS-box transcription factor 16 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187090 ID=CN187090; Name=CN187090; organism=Citrus sinensis; type=EST; length=705bp
AGTCTTGTATATATATTAAACACCAAAGGTCATTTCAATTATTTTTCACA
CAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGACA
CATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATTT
ATTTTTATAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTCT
CTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAAG
CTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAACT
CCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTTC
TTCTGACCTCCTTCAACAGCCTCCAAGGTGATGTCGTACAGAGTCCCTGA
AACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAAT
TCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGATC
TCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAGC
CATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTT
TGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTC
TTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTG
TACGA
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