FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.429e-22
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            EK H+N+VVIGHVD GKST  GHL+Y+LG I+++ ++  E++A    K SFK+AW+L+K+K ERERGITID+   KFET
Sbjct:    3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFET 81          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.867e-22
Identity = 43/79 (54.43%), Postives = 64/79 (81.01%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K H+NIV+IGHVD GKST TGH++Y+LG  D++ ++  E+E+ +M K SFK+AW+L+++K ERERG+TI ++  KFET
Sbjct:    5 QKPHLNIVIIGHVDHGKSTMTGHILYRLGYFDEKTVKMIEEESKKMGKESFKFAWLLDRMKEERERGVTISLSYMKFET 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.184e-22
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M   K H+N+VVIGHVD GKST  GH++Y+LG +D++ I+  E+EA +  K SFK+AW+L+KLK ERERG+TI +   KFET
Sbjct:    1 MSSGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.210e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK HIN+  IGHVD GKST  G L+Y+ G I + +IE+  KEA E  K +F++AWV+++LK ERERG+TID+A  KF+T
Sbjct:    1 MAKEKEHINVAFIGHVDHGKSTLIGRLLYETGEIPEHIIEKMRKEAQEKGKATFEFAWVMDRLKEERERGVTIDVAHRKFQT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.696e-21
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  EK HIN+ VIGH+D GKSTT G L+Y+ G +   +IE+++KEA    K SF +AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MATEKPHINLAVIGHIDHGKSTTVGRLMYEAGAVPAHIIEQYKKEAESKGKGSFAFAWVMDNLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.521e-21
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 2
Query:  131 STTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            ST TGHLIYK GGID+R I+ +EK A EM K SFKYAWVL++LK ERERGITI+IALWKFET
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFET 62          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.006e-21
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L+Y  G I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.006e-21
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L+Y  G I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.844e-21
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K+K H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.844e-21
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M   K H+N+  IGHVD GKST  G ++Y++G ID+ +IE++ KEAA   K +F++AWV++ LK ERERG+TIDIA  +F+T
Sbjct:    1 MADTKPHLNLAFIGHVDHGKSTLVGRMMYEMGAIDEHIIEQYRKEAAAKGKATFEFAWVMDSLKEERERGVTIDIAHQRFDT 82          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_AERPE1.429e-2258.23Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_DESMO1.867e-2254.43Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_STAMF3.184e-2256.10Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_ARCFU1.210e-2156.10Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METHJ2.696e-2156.10Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_GIALA3.521e-2175.81Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_PYRHO6.006e-2162.20Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB6.006e-2162.20Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_PYRFU7.844e-2160.98Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METTP7.844e-2152.44Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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