FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.338e-20
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N+ VIGH+D GKSTT G L+++ G +   +IE F KEA    K SF++AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MANDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.338e-20
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  EK H+N+ VIGH+D GKSTT G L+++ G +   +IE F KEA    K SF++AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MAAEKPHMNLAVIGHIDHGKSTTVGRLLFETGTVPPHIIESFRKEAESKGKGSFEFAWVMDSLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.747e-20
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVL++   ERERG+T+D+ + KFETT
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETT 336          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.747e-20
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVL++   ERERG+T+D+ + KFETT
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETT 336          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.747e-20
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K+K H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+++L+ ERERGITID+A  KFET
Sbjct:    3 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLREERERGITIDVAHTKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.282e-20
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVL++   ERERG+T+D+ + KFETT
Sbjct:  253 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETT 331          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.282e-20
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVL++   ERERG+T+D+ + KFETT
Sbjct:  256 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETT 334          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.981e-20
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L++    I +++I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.981e-20
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK HINIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MAKEKPHINIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_METPE1.338e-2053.66Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METMJ1.338e-2054.88Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
HBS1L_PONAB1.747e-2054.43HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_HUMAN1.747e-2054.43HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
EF1A_PYRWO1.747e-2059.76Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
HBS1L_RAT2.282e-2053.16HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE2.282e-2053.16HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
EF1A_THESM2.981e-2059.76Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_THECE2.981e-2060.98Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_THEON3.893e-2059.76Elongation factor 1-alpha OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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