FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+NIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+++LK ERERGITID+A  KFET
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFET 80          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  EK H+N+V+IGHVD GKST  G L+++ G I + +I+ ++KEA E  K +F++AWV+++ K ERERG+TID+   KFET
Sbjct:    1 MASEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.084e-20
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N++ IGHVD GKST  G L+Y+ G I   +IE + KEA +  K +F++AWV+++ K ERERG+TID+A  KFET
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.084e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N+ VIGH+D GKST  G L+Y+ G +   +IE++++EA +  K SF +AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTLVGRLMYEAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.640e-20
Identity = 42/78 (53.85%), Postives = 60/78 (76.92%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            K  +N+VVIGHVD+GKST  GHL+Y LG ++KR + ++E+E+ +  K SF YAWVL++   ERERG+T+D+ + KFET
Sbjct:  260 KQLLNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFET 337          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.672e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N+ VIGH+D GKST  G L+Y  G +   VIE++++EA +  K SF +AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHVIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.133e-19
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N+ VIGH+D GKST  G L+Y  G +   +IE++++EA +  K SF +AWV++ LK ERERGITIDIA  +F+T
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.133e-19
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K+K  +N+  IGHVD+GKSTT G L+Y  G ID +++E+ ++EA E  K  F++A+V++ LK ERERG+TID+A  KFET
Sbjct:    1 MAKQKPVLNVAFIGHVDAGKSTTVGRLLYDSGAIDPQLLEKLKREAQERGKAGFEFAYVMDNLKEERERGVTIDVAHKKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.479e-19
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M  +K H+N++ IGHVD GKST  G L+++ G I   +IE + KEA +  K +F++AWV+++ K ERERG+TID+A  KFET
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFET 82          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_THEGJ3.893e-2059.76Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_PYRKO3.893e-2059.76Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_PICTO3.893e-2051.22Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_THEAC5.084e-2051.22Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METAC5.084e-2051.22Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
HBS1L_BOVIN6.640e-2053.85HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_METBF8.672e-2052.44Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_METMA1.133e-1951.22Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METJA1.133e-1952.44Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_THEVO1.479e-1950.00Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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