FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.060e-17
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M ++K H N+ VIGHVD GKST  G L+++ G + + VIE++ +EA E  K  F++A+V++ L  ERERG+TIDIA  +F+T
Sbjct:    1 MSEDKPHQNLAVIGHVDHGKSTMVGRLLFETGSVPEHVIEQYREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.385e-17
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K H+N+ +IGHVD GKST TG L+ + G +D++     E EA ++ K  FKYAW++++LK ERERG+TI+     FET
Sbjct:   13 KKPHLNLAIIGHVDHGKSTLTGRLLLETGYVDEKAFAELEAEAKKLGKEDFKYAWIMDRLKEERERGVTIEAMHVGFET 91          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.084e-17
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+L++ K ERERG+TI+     FET
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFET 92          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.084e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V++ LK ERERG+TID+A  KF T
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.084e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K K  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V++ LK ERERG+TID+A  KF T
Sbjct:    1 MAKTKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPT 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.028e-17
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K H+N+ VIGHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+L++ K ERERG+TI+     FET
Sbjct:   14 QKPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFET 92          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.261e-17
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++ ++  E+ A ++ K  F +AW+L++ K ERERG+TI+     FET
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKALKEIEEMAKKIGKEDFAFAWILDRFKEERERGVTIEATHVGFET 92          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.871e-17
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+L++ K ERERG+TI+     FET
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKGFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFET 92          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.974e-17
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K H+N++VIGHVD GKST  G L+   G +D++ I+  E+ A ++ K S KYA++L++LK ERERG+TI++   +FET
Sbjct:    3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFET 81          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.974e-17
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K H+N++VIGHVD GKST  G L+   G +D++ I+  E+ A ++ K S KYA++L++LK ERERG+TI++   +FET
Sbjct:    3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFET 81          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_NATPD1.060e-1748.78Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_CALMQ1.385e-1748.10Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_PYRCJ3.084e-1746.84Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_METVS3.084e-1752.44Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METVA3.084e-1752.44Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_PYRIL4.028e-1746.84Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRAE5.261e-1745.57Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PYRAR6.871e-1746.84Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_SULTO8.974e-1748.10Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_METS58.974e-1748.10Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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