FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.577e-37
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.978e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKNHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.978e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.978e-37
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET+
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGI IDIALWKFET
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIQIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK+HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLK+ERERGITIDIALWKFET
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.807e-37
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A2_XENLA4.577e-3790.24Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_PUCGR5.978e-3787.80Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_CAEEL5.978e-3790.24Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A2_DROME5.978e-3789.16Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_SCHCO7.807e-3787.80Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_ONCVO7.807e-3790.24Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_AURPU7.807e-3787.80Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_ARTSA7.807e-3790.24Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_APIME7.807e-3790.24Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A1_DROME7.807e-3790.24Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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