CK937060
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19 Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 3 Query: 45 VPILSFL----LMASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 320 VP+ S L LM++ + F+GGL+W T D+SL +AF +GD++++K+I DRETGRSRGFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 3 Query: 75 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 S D R +VG L+W D +L E F G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 90 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 +R +VG + W D+ L + F +G ++ ++++ DRETGRSRGFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 3 Query: 75 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 S D R +VG L+W D +L E F G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 90 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 FR +VG L W + L + F +G ++E++++ DRETGRSRGFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 87 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 320 E + FVGGL + TT+ SL + F YG + E ++ DRE+ RSRGFGFVTF + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3 Query: 78 GDVEFRC--FVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 GD E C +VG L W S L + F +G ++ +++++DRETGRSRGFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15 Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 87 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 320 E + FVGGL++ T + SL + F YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15 Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 3 Query: 87 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 320 E + FVGGL++ T + SL + F YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK937060 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 90 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 323 +R +VG + W D+ L + F +G ++ ++++ DRE+GRSRGFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268 The following BLAST results are available for this feature:
BLAST of CK937060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937060 ID=CK937060; Name=CK937060; organism=Citrus sinensis; type=EST; length=721bpback to top |