CK937035

Overview
NameCK937035
Unique NameCK937035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 416
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            + CGQV  SLA CI FL  G   P   CC GV++L   A T+ DR+AAC C+K A    P I  + A+ LP++CGV I   IS  T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVS-IPYKISPNTDCSRV 413
            PV  AI+C QV  ++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK   +S  G+    AA LP  C V+ +   ISPN DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  135 NAITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            +AI+C  V   L PC+++L +G   PP  CC+GV+SL  A  T+ D++AAC C+K    S+  +   +A  L   CG S+P   SP  DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI---PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 416
            A++C  V   L PC++++  GG  P  LCCNG+ +L   A+T+ DRQ  C C+K A   +   P    N A  LP +CGV +PYK SP+TDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPT-LCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQN-ALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYR--SIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 416
            AI+C  V  +L PC+ ++  GG  P   CCNG+R L+  A +  D+Q  C C+K      S   I    AA LP +CGV +PYKI P+T+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 413
            + CGQV  +L+ C+ FL      P   CC GV  L   A T  D++ AC C+K A    P I  + A+ LP +CGV I   IS  T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK937035 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 31/90 (34.44%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  144 TCGQVTGSLAPCIAFLRTGGRFPPPLCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP---NTDC 404
            TCG V G+L PC+ F++   + P   CC+G + L+G  +T P R  AC C++ A ++   I+  + + +P+ CG+ +  K+ P   N DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
The following BLAST results are available for this feature:
BLAST of CK937035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP5_ARATH1.105e-1752.13Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTPA_RICCO2.722e-1645.05Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA6.065e-1643.30Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH1.765e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP6_ARATH1.765e-1541.67Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_ARATH5.134e-1540.00Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTPB_RICCO2.385e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT13_PARJU2.019e-1134.44Probable non-specific lipid-transfer protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_B08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937035 ID=CK937035; Name=CK937035; organism=Citrus sinensis; type=EST; length=668bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTCCATGCATCGCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCCCTATGCTGTAACGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGC
AAGCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTT
CCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTGCGAGTCTCACTCTCATGTCATGTTT
GTATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTT
TGAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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