CK937031

Overview
NameCK937031
Unique NameCK937031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NUOG_PSESM (NADH-quinone oxidoreductase subunit G OS=Pseudomonas syringae pv. tomato GN=nuoG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.878e-12
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  607 AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            +K  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  ++ LGP +   M RCI C R
Sbjct:   84 SKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFIAHEMNRCIACYR 156          
BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NQO3_THET8 (NADH-quinone oxidoreductase subunit 3 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.437e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFG-----SDRG--------RFTEMKRSVVDKN--LGPLVKTVMTRCIQCTR 825
            GM + T + + ++A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G       +G        RF E  R  VDK+  L P V     RCI C R
Sbjct:   90 GMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRF-EFTRRHVDKHHPLSPFVILDRERCIHCKR 186          
BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAI (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  619 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            R  ++E LL NHP DCP+C++GG C LQD ++        +   KR+  ++ LGP +K  M RCI C R
Sbjct:   88 RSAIVELLLTNHPHDCPVCEEGGHCHLQDMTVMVKHSMRNYRFKKRTHKNQYLGPFIKHEMNRCIACYR 156          
BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NUOG_BLOFL (NADH-quinone oxidoreductase subunit G OS=Blochmannia floridanus GN=nuoG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  619 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            R+ ++E L++NHP DCP+C++GG C LQD ++       R+   KR+  ++ LGP +   M RCI C R
Sbjct:   96 RKNILELLMVNHPHDCPVCEEGGNCHLQDMAVMVEHTYRRYRFTKRTHYNQYLGPFITHEMNRCITCYR 164          
The following BLAST results are available for this feature:
BLAST of CK937031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NUOG_PSESM2.878e-1242.47NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NQO3_THET82.437e-1140.82NADH-quinone oxidoreductase subunit 3 OS=Thermus t... [more]
NUOG_BUCAI7.090e-1142.03NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BLOFL7.090e-1140.58NADH-quinone oxidoreductase subunit G OS=Blochmann... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_B02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937031 ID=CK937031; Name=CK937031; organism=Citrus sinensis; type=EST; length=871bp
GCGGGGGAAGAANNNCGTTCAACATCAGACCANNNTCGAGCTTGAGCGAG
AGAGAATCGAAAATGGGGTTAGGGTTGTTAGCATCGAGGGCGATGAGACC
CCTCAAGTATTCAAACTCCAGAGTCTTTATCCGGTCCATCGTTTCCAAAC
CGGAGCTCCAATCACCCGAAGCTTCTTCAGCAGCAGCGGCTACAGCGCTC
GAACCGGATCTCCCCCCTCGATCGCCCGTGGGTGGGGCCCGGGTCCATTT
CCCCAACCCTGAAGATGCAATCGAAGTGTTCGTCGATGGTTACCCGCTCA
AAATCCCCAAGGGCTTCACCGTCTTGCAGGCCTGTGAGGTCGCCGGCGTT
GACATTCCTAGATTTTGTTATCACAGTAGACTTTCGATTGCCGGAAATTG
CCGAATGTGTCTCGTTGAAGTCGAGAAATCGCCCAAACCTGTTGCTTCTT
GCGCCATGCCTGCTCTTCCCGGTTAGCTTTCGATTTCCTATTAGGGTTTA
TTGGTTTGTTTGTTTTTTAATTCCGTTTTGATTATTTGATTTTTTATTTT
ATATTAATAATGTGTGTTTGATTTTAGGAATGAAAATTAAGACGGATACA
CCGTTAGCTAAGAAGGCGAGAGAAGGGGTGATGGAGTTTTTGTTAATGAA
TCATCCTTTGGATTGTCCAATTTGTGATCAGGGTGGTGAATGTGATCTCC
AGGATCAGTCTATGGCTTTCGGTTCTGATCGTGGCCGCTTCACTGAAATG
AAAAGATCTGTTGTTGATAAGAATCTTGGTCCGTTGGTGAAGACTGTCAT
GACTCGATGTATCCAATGCACAAGGGTAGAATCTGGTTGTATCATGTTGC
TTGTTTCTCGNAATCTTCTCG
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