CK936986

Overview
NameCK936986
Unique NameCK936986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.021e-20
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   37 CATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          

HSP 2 Score: 22.3274 bits (46), Expect = 9.021e-20
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLA 173
            V  AI+CG V GSLA
Sbjct:   21 VDAAISCGTVAGSLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.174e-19
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   37 CLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          

HSP 2 Score: 24.6386 bits (52), Expect = 1.174e-19
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   A+TCGQVT  LA
Sbjct:   20 PHAEALTCGQVTAGLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.527e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   37 CLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          

HSP 2 Score: 24.6386 bits (52), Expect = 1.527e-19
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   A+TCGQVT  LA
Sbjct:   20 PHAEALTCGQVTAGLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.986e-19
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:   39 CIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          

HSP 2 Score: 22.3274 bits (46), Expect = 1.986e-19
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P+  AITCG V   LA
Sbjct:   22 PLAEAITCGLVASKLA 37          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI +LR+ G  P   CCNGV++L  +A TT DR+ AC CL  A +SI G+N  +AAGLP +CGV+IPYKISP+T+C +V
Sbjct:   13 CINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   37 CLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A ++I G+N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:   13 CINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   39 CIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   39 CIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   39 CIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CK936986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_ARATH9.021e-2051.25Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_SOLLC1.174e-1955.00Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN1.527e-1955.00Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_BETVU1.986e-1955.70Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP5_VITSX2.088e-1955.70Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP4_ARATH2.727e-1953.75Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_VITSX2.727e-1955.70Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTPD_BRAOT6.076e-1955.00Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTPB_BRAOT7.935e-1957.50Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_BRANA7.935e-1957.50Non-specific lipid-transfer protein 2 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936986 ID=CK936986; Name=CK936986; organism=Citrus sinensis; type=EST; length=680bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTATGCATCGCTTTCTTGAGAACTGGAGG
GCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAA
GCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCC
TCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACT
GCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTTTG
AGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAATTCTCCCTTA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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