CK936986

Overview
NameCK936986
Unique NameCK936986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   39 CISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.523e-19
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   40 CIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          

HSP 2 Score: 24.2534 bits (51), Expect = 9.523e-19
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P  +A+TCGQV   LA
Sbjct:   23 PAASAVTCGQVVSMLA 38          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.624e-19
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:   37 CLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          

HSP 2 Score: 20.7866 bits (42), Expect = 9.624e-19
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   +++CG+VT  LA
Sbjct:   20 PHAESLSCGEVTSGLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI++ R  G  PP  CC+GV+ L GAA++T D+QAAC CLK    SI GIN    +G+P +CGVS+P+ IS +TDC++V
Sbjct:   39 CISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   39 CISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   39 CISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++  GG  P   CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   39 CIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   39 CIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.628e-18
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   37 CLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 20.7866 bits (42), Expect = 1.628e-18
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   A++CGQV   LA
Sbjct:   20 PHAEALSCGQVQSGLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   39 CLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
The following BLAST results are available for this feature:
BLAST of CK936986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLT41_HORVU7.935e-1952.50Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP4_ORYSJ9.523e-1951.90Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLLC9.624e-1957.50Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP3_HORVU1.036e-1851.90Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLT43_HORVU1.036e-1852.50Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.036e-1852.50Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTPA_BRAOT1.354e-1853.09Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP3_BRANA1.354e-1856.25Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP2_TOBAC1.628e-1855.00Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_LENCU1.768e-1853.75Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936986 ID=CK936986; Name=CK936986; organism=Citrus sinensis; type=EST; length=680bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTATGCATCGCTTTCTTGAGAACTGGAGG
GCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAA
GCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCC
TCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACT
GCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTTTG
AGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAATTCTCCCTTA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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