CK936986

Overview
NameCK936986
Unique NameCK936986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   39 CIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:   40 CIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.583e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:   13 CIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          

HSP 2 Score: 21.557 bits (44), Expect = 3.583e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            +TCGQV G+LA
Sbjct:    1 MTCGQVQGNLA 11          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.660e-18
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L   G  P   CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   37 CLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 25.0238 bits (53), Expect = 4.660e-18
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   A+TCGQVT +LA
Sbjct:   20 PHAEALTCGQVTSTLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            C+A+ R  G  P   C +GVRSLN AARTT DR+AACNC LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:   14 CLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   40 CVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.734e-17
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L   G  P   CC GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   37 CLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 25.0238 bits (53), Expect = 1.734e-17
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   A+TCGQVT +LA
Sbjct:   20 PHAEALTCGQVTSTLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.960e-17
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   39 CIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          

HSP 2 Score: 21.9422 bits (45), Expect = 4.960e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  138 AITCGQVTGSLA 173
            A++CG VTG LA
Sbjct:   26 AVSCGTVTGDLA 37          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  175 CIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 405
            C  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   39 CTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            C+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   39 CLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
The following BLAST results are available for this feature:
BLAST of CK936986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_BRANA1.768e-1856.25Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_SPIOL3.015e-1855.70Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_PHAAU3.583e-1851.90Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP2_SOLPN4.660e-1852.50Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP_ELECO5.143e-1855.00Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP6_GOSHI8.773e-1854.32Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP2_SOLCI1.734e-1752.50Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP3_LENCU4.960e-1753.75Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP7_ARATH7.427e-1753.09Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP1_HORVU1.655e-1648.10Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936986 ID=CK936986; Name=CK936986; organism=Citrus sinensis; type=EST; length=680bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTATGCATCGCTTTCTTGAGAACTGGAGG
GCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAA
GCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCC
TCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACT
GCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTTTG
AGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAATTCTCCCTTA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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