CN187029

Overview
NameCN187029
Unique NameCN187029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_SCHPO (Probable pyridoxine biosynthesis PDX1-like protein OS=Schizosaccharomyces pombe GN=snz1 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 90/162 (55.56%), Postives = 116/162 (71.60%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 491
            +LGEALRRI EG AMIRTKGEAGTG+++EAVRH R + G++R +++M  DE++T+AK+IAAP DLV +  QLGRLPVV+F            +MMQLGCD            DP KRA+AIVRAVTHY+DP++LAEVS  LG AMVG ++S   + E+ A+R
Sbjct:  133 NLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMSPDELYTYAKEIAAPIDLVKECAQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFLSGDPAKRARAIVRAVTHYNDPKILAEVSENLGAAMVGRSVSSLEEKEKLATR 294          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAD (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.758e-42
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            +LGEALRRI EG AM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F            ++MQLG D            +P+KRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     E+  +R
Sbjct:  130 NLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGNPIKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPAEQLMAR 290          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_ROSS1 (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus sp. (strain RS-1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 84/151 (55.63%), Postives = 109/151 (72.19%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 461
            +LGEALRR+ EG AM+RTKGEAGTGN++EAVRH R+V  +IR L++MD+DE+FT+AK I APY+LV Q  + GRLPVV+F            ++MQLG D            DP +RA+AIV A THY++PE++AEVS GLGEAMVG+ +S
Sbjct:  130 NLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMDEDELFTYAKNIQAPYELVRQVAETGRLPVVNFAAGGIATPADAALLMQLGVDGVFVGSGIFKSGDPARRARAIVAATTHYNEPEIIAEVSRGLGEAMVGIEIS 280          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_ROSCS (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pdxS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 458
            +LGE LRR+ EG AM+RTKGEAGTGN++EAVRH R+V  +IR L+ MD+DE+FT+AK I APY+LV Q  + GRLPVV+F            ++MQLG D            DP +RA+AIV A THY++PE++AEVS GLGEAMVG+ +
Sbjct:  130 NLGEGLRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQTMDEDELFTYAKNIQAPYELVRQVAESGRLPVVNFAAGGIATPADAALLMQLGVDGVFVGSGIFKSGDPARRARAIVAATTHYNEPEIIAEVSRGLGEAMVGIEI 279          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_NATTJ (Pyridoxal biosynthesis lyase pdxS OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pdxS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 86/162 (53.09%), Postives = 112/162 (69.14%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 491
            +LGEALRR+ EG +M+RTKGEAGTGN++EAVRH+R+VM  IR ++N+ DDE+ T AK I APYDL+ Q K+ GRLPVV+F            +MMQLG D            DP KRA++IV A  +Y + +VLA+VS GLGEAMVG+N+SD  + ER  +R
Sbjct:  132 NLGEALRRVGEGASMMRTKGEAGTGNVVEAVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNR 293          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_DICDI (Probable pyridoxine biosynthesis protein pdx1 OS=Dictyostelium discoideum GN=pdx1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.066e-39
Identity = 83/154 (53.90%), Postives = 111/154 (72.08%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 470
            +LGEALRRI EG AMIRTKGEAGTG+++EAVRH R+V  +I+ ++NMD  E++T+AK+I AP +LV + K+LGRLPVV+F            MMMQLG D            DP KRA+AIV+AVTH+++P+++A+VS  LGEAMVG+N+   K
Sbjct:  140 NLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHARAVNKEIKKIQNMDPHELYTYAKEIQAPLELVKEVKRLGRLPVVNFAAGGVATPADAAMMMQLGMDGVFVGSGIFKSGDPAKRAKAIVQAVTHFNNPQIVAKVSENLGEAMVGINVDTLK 293          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DEHE1 (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides ethenogenes (strain 195) GN=pdxS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            DLGEALRRI EG AMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP +LV++  + G+LPVV+F            +MMQLG D            DP   A+A+V+AVTHY D +VLAE+S GLG+AM GL++   + ++  SR
Sbjct:  130 DLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYAKEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAAMAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_THET8 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pdxS PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38
Identity = 87/162 (53.70%), Postives = 108/162 (66.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASR 491
            +LGEALRRI EG AMIRTKGEAGTGN++EAVRH R++  +IR ++++ +DE+  +AK+I AP++LV      GRLPVV+F            +MM LG D            DP KRA+AIVRAV HY+DPEVLAEVS  LGE MVG+NL   K  ER A R
Sbjct:  130 NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 291          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_THET2 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pdxS PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38
Identity = 87/162 (53.70%), Postives = 108/162 (66.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASR 491
            +LGEALRRI EG AMIRTKGEAGTGN++EAVRH R++  +IR ++++ +DE+  +AK+I AP++LV      GRLPVV+F            +MM LG D            DP KRA+AIVRAV HY+DPEVLAEVS  LGE MVG+NL   K  ER A R
Sbjct:  130 NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 291          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_HERA2 (Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pdxS PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.011e-38
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 458
            +LGEALRRI EG AMIRTKGEAGTGN++EAVRH R++  +IR L+ +D DE+F  AK + APY+LV Q  +LGRLPVV+F            +MMQLG D            +P KRA+AIV A TH+ D ++LAE+S  LGEAMVG+N+
Sbjct:  130 NLGEALRRITEGAAMIRTKGEAGTGNVVEAVRHARTMFAEIRRLQTLDPDELFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSGNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINI 279          
The following BLAST results are available for this feature:
BLAST of CN187029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDX1_SCHPO1.030e-4255.56Probable pyridoxine biosynthesis PDX1-like protein... [more]
PDXS_CHLAD1.758e-4253.42Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_ROSS15.114e-4255.63Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus s... [more]
PDXS_ROSCS7.384e-4154.67Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus c... [more]
PDXS_NATTJ4.786e-4053.09Pyridoxal biosynthesis lyase pdxS OS=Natranaerobiu... [more]
PDX1_DICDI1.066e-3953.90Probable pyridoxine biosynthesis protein pdx1 OS=D... [more]
PDXS_DEHE15.292e-3951.55Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_THET81.540e-3853.70Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDXS_THET21.540e-3853.70Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDXS_HERA22.011e-3854.00Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003N02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187029 ID=CN187029; Name=CN187029; organism=Citrus sinensis; type=EST; length=794bp
GGCTGCCGGACTTGGGGGAAGCTTTGAGGAGGATTCGCGAAGGCGTGGCG
ATGATAAGAACGAAGGGCGAGGCCGGAACGGGGAATATTATCGAAGCGGT
GAGGCACGTGCGGTCTGTGATGGGGGATATTAGGGTTCTGAGGAACATGG
ACGATGACGAGGTGTTCACTTTCGCAAAGAAGATAGCGGCGCCGTACGAC
TTGGTGATGCAGACGAAGCAGCTGGGGCGGTTGCCGGTGGTGCACTTCGC
AGCGGGAGGAGTGGCGACGCCGGCGGATGCAGCGATGATGATGCAACTTG
GATGCGACGGAGTGTTTGTCGGGTCGGGCGTGTTTAAGAGCGGGGACCCG
GTGAAGCGGGCCCAGGCAATTGTACGGGCGGTGACTCATTACAGTGACCC
GGAGGTGTTGGCGGAGGTGAGCTGCGGGTTGGGCGAGGCCATGGTGGGTC
TTAATTTGAGTGACCACAAGGTTGAGAGGTTCGCTAGTCGCTCCGAATAA
ATGAAAGAGATGAGGTCCCGAAGCCCTTTATTAATCATTATCTGTAAGCT
TTTTCCTTTTTCTTTAAATCTTATGTAGTAAGCGGGATTCAAACTTCAAA
CCGCAGTAGTTGTCGTAATGTTTTCTTTGGGTGTTAGTTCAATTTACACA
ACTTGTCAATTGAAAACTCTGTTCTTCTTTACCAATATGAATATTTTACG
CTCGGAATGTTAAAAAAAAATTTTTTACAGGATGACCATTTTGTTTGATT
GGTTCAATATAAGTACAACATTAAGCTTGAGCTAAAGGGACCAA
back to top