CN187029

Overview
NameCN187029
Unique NameCN187029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 79/125 (63.20%), Postives = 93/125 (74.40%), Query Frame = 3
Query:   78 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 452
            TGN++EAVRH+RSVMG+IR+LRNMDDDEVF +AKKI+A YDLVMQTKQLGRLPVV+F            +MMQLGCD            DP KRA+AIV+AVTHYSDP++L     GLGEAMVG+
Sbjct:   93 TGNVVEAVRHIRSVMGEIRLLRNMDDDEVFAYAKKISAAYDLVMQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPDLLGRGEFGLGEAMVGI 217          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSC (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain CBDB1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 80/161 (49.69%), Postives = 109/161 (67.70%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            DLGEALRRI EG AMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP +LV++  + G+LPVV+F            +MMQLG D            +P   A+A+V+AVTHY D ++LAE+S GLG+AM GL++     ++  S+
Sbjct:  130 DLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPSAMAKAVVKAVTHYKDAQILAEISKGLGDAMPGLDIKQIDPDKLISQ 290          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSB (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain BAV1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 80/161 (49.69%), Postives = 109/161 (67.70%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            DLGEALRRI EG AMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP +LV++  + G+LPVV+F            +MMQLG D            +P   A+A+V+AVTHY D ++LAE+S GLG+AM GL++     ++  S+
Sbjct:  130 DLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPSAMAKAVVKAVTHYKDAQILAEISKGLGDAMPGLDIKQIDPDKLISQ 290          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_HELMI (Pyridoxal biosynthesis lyase pdxS OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.792e-37
Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 458
            +LGEALRRI EG AMIRTKGE GTGN++EAVRH R VM +IR L  +  +E  +FAK+I APY+LV    + GRLPVV+F            +MMQLG D            DP++RA+AIV A THY+DP+V+AEVS  LGE MVG+ +
Sbjct:  132 NLGEALRRIGEGAAMIRTKGEPGTGNVVEAVRHARQVMSEIRKLTTLPKEERMSFAKEIGAPYELVCLVAETGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSGDPIRRAKAIVAATTHYNDPKVIAEVSKDLGEPMVGIEI 281          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.792e-37
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 458
            DLGEALRRI EG AMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP +LV++TK+LGRLPVV+F            +MM LG D            DP KRA+AIV AVT+Y DP VLAE+S  LGE M G+++
Sbjct:  132 DLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRALALLPDEELVAKAKELGAPLELVIETKKLGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGIFKSKDPRKRARAIVLAVTYYDDPYVLAEISEDLGEPMPGIDV 281          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.469e-37
Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   12 LGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            LGEALRRI EG AMIRTKGEAGTGN++EAVRH R +  +IRV + +   E++ +AK++  P DL+ +T +LGRLPVV+F            ++MQLG D            +P KRA+A+V+AVTHY+DP+VLA+VS  LG+ MVGLN  +H  E++A R
Sbjct:  142 LGEALRRISEGAAMIRTKGEAGTGNVVEAVRHARQINREIRVAQCLSSAELYGYAKQLGVPLDLLQKTAKLGRLPVVNFAAGGLATPADVSLLMQLGVDGVFVGSGIFKSGNPEKRAKAMVQAVTHYNDPKVLADVSEDLGDPMVGLN-CEHLSEKWAQR 300          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DICTD (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pdxS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.882e-36
Identity = 80/150 (53.33%), Postives = 103/150 (68.67%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 458
            DLGEALRRI EG AMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP DL+++TK+LGRLPVV+F            +MM LG D            +P KRA+AIV AVT+Y DP VLAE+S  LGE M G+++
Sbjct:  132 DLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRSLVLLPDEELVAKAKELGAPLDLIIETKKLGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGIFKSKNPRKRARAIVLAVTYYDDPYVLAEISEDLGEPMPGIDV 281          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_STRCO (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces coelicolor GN=pdxS PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.458e-36
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 491
            +LGEALRRI EG AMIR+KGEAGTGN++EAVRH+R +  +I  LR  D++E++  AK++ APY+LV +  +LGRLPVV F            +M QLG +            DP KRA AIV+A T Y DP+++A+ S  LGEAMVG+N     + ER+A+R
Sbjct:  140 NLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPYELVKEVSELGRLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTLPETERYANR 301          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.458e-36
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE-RFASR 491
            +LGEALRR+ EG +MIRTKGEAGTGN++EAVRH R+V+GDIR +++   +E+ T A+ + APYDLV      G+LPVV+F            +MMQLG D            +P +RAQAIVRAVTH+ +P++LAEVS  LG  M G+N+ +   E R ASR
Sbjct:  144 NLGEALRRVGEGASMIRTKGEAGTGNVVEAVRHARAVLGDIRAVQSRPAEELMTVARDLQAPYDLVQYVHAHGQLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKSANPERRAQAIVRAVTHFQNPDILAEVSEDLGAPMTGINIDELIPEARLASR 305          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_EMENI (Pyridoxine biosynthesis protein pyroA OS=Emericella nidulans GN=pyroA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIR----VLRNMDDDE--VFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 476
            +LGEALRRI EG AMIRTKGEAGTG+++EAV+H+R+V  +I     +L++  D E  +  +A+++ APY+L+ +  + GRLPVV+F            +MMQLGCD            D  KRA+AIV+AVTHY DP+VLAEVS GLGEAMVG+N+S  K E
Sbjct:  135 NLGEALRRISEGAAMIRTKGEAGTGDVVEAVKHMRTVNAEIARARAILQSSPDPEPELRAYARELEAPYELLREAAEKGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDAKKRAKAIVQAVTHYKDPKVLAEVSQGLGEAMVGINVSHMKDE 296          
The following BLAST results are available for this feature:
BLAST of CN187029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDX1_STELP2.626e-3863.20Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDXS_DEHSC1.303e-3749.69Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHSB1.303e-3749.69Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_HELMI3.792e-3753.33Pyridoxal biosynthesis lyase pdxS OS=Heliobacteriu... [more]
PDXS_DICT63.792e-3754.00Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDX1_SUBDO6.469e-3750.63Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_DICTD1.882e-3653.33Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_STRCO2.458e-3648.77Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_DEIRA2.458e-3650.00Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]
PDX1_EMENI4.193e-3651.23Pyridoxine biosynthesis protein pyroA OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003N02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187029 ID=CN187029; Name=CN187029; organism=Citrus sinensis; type=EST; length=794bp
GGCTGCCGGACTTGGGGGAAGCTTTGAGGAGGATTCGCGAAGGCGTGGCG
ATGATAAGAACGAAGGGCGAGGCCGGAACGGGGAATATTATCGAAGCGGT
GAGGCACGTGCGGTCTGTGATGGGGGATATTAGGGTTCTGAGGAACATGG
ACGATGACGAGGTGTTCACTTTCGCAAAGAAGATAGCGGCGCCGTACGAC
TTGGTGATGCAGACGAAGCAGCTGGGGCGGTTGCCGGTGGTGCACTTCGC
AGCGGGAGGAGTGGCGACGCCGGCGGATGCAGCGATGATGATGCAACTTG
GATGCGACGGAGTGTTTGTCGGGTCGGGCGTGTTTAAGAGCGGGGACCCG
GTGAAGCGGGCCCAGGCAATTGTACGGGCGGTGACTCATTACAGTGACCC
GGAGGTGTTGGCGGAGGTGAGCTGCGGGTTGGGCGAGGCCATGGTGGGTC
TTAATTTGAGTGACCACAAGGTTGAGAGGTTCGCTAGTCGCTCCGAATAA
ATGAAAGAGATGAGGTCCCGAAGCCCTTTATTAATCATTATCTGTAAGCT
TTTTCCTTTTTCTTTAAATCTTATGTAGTAAGCGGGATTCAAACTTCAAA
CCGCAGTAGTTGTCGTAATGTTTTCTTTGGGTGTTAGTTCAATTTACACA
ACTTGTCAATTGAAAACTCTGTTCTTCTTTACCAATATGAATATTTTACG
CTCGGAATGTTAAAAAAAAATTTTTTACAGGATGACCATTTTGTTTGATT
GGTTCAATATAAGTACAACATTAAGCTTGAGCTAAAGGGACCAA
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