EY665848

Overview
NameEY665848
Unique NameEY665848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   28 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN-LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 372
            N +  L L + QL+G+IPE L + C +L+ L LS N+  G + S+  + L  L +L L GN L G IP  +  C  L  L LN N L+G IP  L  L  L+ + + +N L G IP
Sbjct:   65 NRILSLQLQSMQLSGQIPESLKL-CRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLSGSIP 179          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 357
            S+P  FG    +  L+L+ NQLT +IPE ++   V+LE L LSNN LK        NL  LR L LE N LE  +P  ++    L+ L L NN LS  +PR +G+LT L H+ + EN L
Sbjct:  393 SLPLDFGTWTSMVELNLATNQLT-KIPEDVS-GLVSLEVLILSNNLLKKLPHGLG-NLRKLRELDLEENKLE-SLPNEIAYLKDLQKLVLTNNQLS-TLPRGIGHLTNLTHLGLGENLL 506          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  118 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISRXKISGSLPS 447
            L +++  L G + +    LT+L +L L+ N L G IP  L + S LE L L+ N  SG+IP  LG LT L ++ +  N L G +P     L  L  LD+S   +SG  P+
Sbjct:   84 LEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTPN 193          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: SHOC2_DANRE (Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 56/148 (37.84%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    1 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISRXKISGSLP 444
            S+P  FG    +  L+L+ NQLT +IPE +    V+LE L LSNN LK   +    NL  LR L LE N LE  +P  ++    L+ L L NN L+  +PR +G+LT L ++ + EN L+  +P     L +L+ L ++      SLP
Sbjct:  372 SLPLDFGTWTSMVELNLATNQLT-KIPEDIC-GLVSLEMLTLSNNLLKKLPYGIG-NLRKLRELDLEENKLE-SLPNEIAYLKDLQKLVLTNNQLT-TLPRGIGHLTNLTYLGLGENLLQ-HLPEEIGTLENLEDLYLNDNPNLHSLP 513          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: LRC15_MOUSE (Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 1
Query:    4 IPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISRXKISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFLCSSLVTLNLSYN 567
            +P +F N+  L+ L L+NN+L   +P  L     NLE L LSNN L     ++    +NL+ LQL GN+LE  IP+ +      L  L L NN  +   PR   +L  L+ + + EN L   IP+G F  L +LQ L +   +I    P  FH   ++++++LS N +   L  G F     L  L L  N
Sbjct:   93 MPGAFRNLGSLRHLSLANNKLKN-LPVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLE-YIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRL-SDIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLYLSNNHI-SHLPPGIFMQLPHLNKLTLFGN 279          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    7 PSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 372
            P++ G +  L+IL L +N L+G +P  +  S  +L+++ L +NN  G + S  F    L  L L  N   G+IP +      L GL L NN LSG +P    +   L+ + +  NHL G IP
Sbjct:  105 PNTLGKLESLRILSLRSNLLSGNLPPDIH-SLPSLDYIYLQHNNFSGEVPS--FVSRQLNILDLSFNSFTGKIPATFQNLKQLTGLSLQNNKLSGPVPNL--DTVSLRRLNLSNNHLNGSIP 221          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    7 PSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN--LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 372
            P++ G ++ L++L L +N L G +P  + +S  +LE+L L +NN  G + + +    +  L  L L  N L G IP  L   S +  LYL NNS  G I     +L  +K + +  N+L GPIP
Sbjct:   91 PATLGKLDALKVLSLRSNSLFGTLPSDI-LSLPSLEYLYLQHNNFSGELTTNSLPSISKQLVVLDLSYNSLSGNIPSGLRNLSQITVLYLQNNSFDGPIDSL--DLPSVKVVNLSYNNLSGPIP 211          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: SHOC2_RAT (Leucine-rich repeat protein SHOC-2 OS=Rattus norvegicus GN=Shoc2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 357
            S+P  FG    +  L+L+ NQLT +IPE ++   V+LE L LSNN LK        NL  LR L LE N LE  +P  ++    L+ L L NN L+  +PR +G+LT L H+ + EN L
Sbjct:  393 SLPLDFGTWTSMVELNLATNQLT-KIPEDVS-GLVSLEVLILSNNLLKKLPHGLG-NLRKLRELDLEENKLE-SLPNEIAYLKDLQKLVLTNNQLT-TLPRGIGHLTNLTHLGLGENLL 506          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: SHOC2_PONAB (Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 357
            S+P  FG    +  L+L+ NQLT +IPE ++   V+LE L LSNN LK        NL  LR L LE N LE  +P  ++    L+ L L NN L+  +PR +G+LT L H+ + EN L
Sbjct:  393 SLPLDFGTWTSMVELNLATNQLT-KIPEDVS-GLVSLEVLILSNNLLKKLPHGLG-NLRKLRELDLEENKLE-SLPNEIAYLKDLQKLVLTNNQLT-TLPRGIGHLTNLTHLGLGENLL 506          
BLAST of EY665848 vs. ExPASy Swiss-Prot
Match: SHOC2_HUMAN (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 357
            S+P  FG    +  L+L+ NQLT +IPE ++   V+LE L LSNN LK        NL  LR L LE N LE  +P  ++    L+ L L NN L+  +PR +G+LT L H+ + EN L
Sbjct:  393 SLPLDFGTWTSMVELNLATNQLT-KIPEDVS-GLVSLEVLILSNNLLKKLPHGLG-NLRKLRELDLEENKLE-SLPNEIAYLKDLQKLVLTNNQLT-TLPRGIGHLTNLTHLGLGENLL 506          
The following BLAST results are available for this feature:
BLAST of EY665848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
Y1699_ARATH8.519e-1239.66Probable LRR receptor-like serine/threonine-protei... [more]
SHOC2_MOUSE2.479e-1142.86Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]
Y5457_ARATH3.237e-1137.27Probable LRR receptor-like serine/threonine-protei... [more]
SHOC2_DANRE3.237e-1137.84Leucine-rich repeat protein SHOC-2 OS=Danio rerio ... [more]
LRC15_MOUSE3.237e-1134.03Leucine-rich repeat-containing protein 15 OS=Mus m... [more]
Y5830_ARATH4.228e-1134.43Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y5516_ARATH5.522e-1134.68Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
SHOC2_RAT5.522e-1142.02Leucine-rich repeat protein SHOC-2 OS=Rattus norve... [more]
SHOC2_PONAB5.522e-1142.02Leucine-rich repeat protein SHOC-2 OS=Pongo abelii... [more]
SHOC2_HUMAN5.522e-1142.02Leucine-rich repeat protein SHOC-2 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665848 ID=EY665848; Name=EY665848; organism=Citrus sinensis; type=EST; length=879bp
AGCATTCCCTCTTCATTTGGTAATATGAACTTTCTCCAAATTCTGGACTT
ATCCAACAACCAATTGACTGGTGAAATCCCCGAGCACTTGGCCGTCAGTT
GCGTCAACTTGGAGTTTCTTGCATTATCAAACAACAACTTAAAAGGTCAT
ATGTTCTCCAGAAACTTTAACCTGACAAACTTGAGATCATTACAATTGGA
AGGCAATCACCTCGAAGGAGAGATCCCACAAAGTTTGTCTAAATGCTCCT
CACTAGAAGGATTGTATCTTAATAATAACAGTCTCTCGGGTAAGATTCCA
CGATGGTTGGGTAATCTCACAGGGTTAAAACATATTATAATGCCCGAGAA
TCATCTTGAAGGTCCTATTCCAGTTGGGTTTTGTCAACTTTATTCGCTTC
AGATTTTGGACATTTCACGGAANAAAATATCTGGAAGTTTACCATCTTGT
TTCCATCCTCTCTCTATTGAACAAGTTCATCTTTCAAAAAATATGTTACA
TGGACAGCTAAAAAGAGGGACATTCTTTCTTTGCTCCTCCCTGGTGACAT
TAAATCTCAGCTATAACCGGTTTGAAGGGCAACATTCCGAAATGGGTTGA
AGGGCTTTTCTCGTTAACCCCCCTAATCTTAGGCCACAATAATCCTTGAA
GGGGAAATGCCACGTACCTTGTGCCCATTTAACCCACCTAACAAATTGGT
AAAAATTTTTCTAAAAATAATCTTCTACCGCCCTAATTCCCCCTTGCTTT
TGAAAAACCCCCACTTCACTAAAAGTTCCAACAAAGGCTAAAAGTCTTAA
ACCCTTTTACAAACACTTCCTTTGGCCGTGGGCAGGCTTTCATTATCCCC
TGGAAAAAAATACATTTTTCCTTTGAATC
back to top