CN187023

Overview
NameCN187023
Unique NameCN187023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLIVTDPRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_RAT (40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_PIG (40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_MOUSE (40S ribosomal protein SA OS=Mus musculus GN=Rpsa PE=1 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_HUMAN (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_CERAE (40S ribosomal protein SA OS=Cercopithecus aethiops GN=RPSA PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.188e-28
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  NIP IA C+TDSP+RYVD+ IP NNK  HS+G ++WLLAR VL++RGTI   H W+VMVDL+FYR
Sbjct:  121 LLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM DL+FYR
Sbjct:  121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_NEMVE (40S ribosomal protein SA OS=Nematostella vectensis GN=v1g198553 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.455e-28
Identity = 72/161 (44.72%), Postives = 91/161 (56.52%), Query Frame = -1
Query:  353 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSG-EQWPSQIADGGWA--GGEVQKPIPVVPYFPEAPAATVPLGGDGWD 826
            LLI+ DPR DHQP+ EA+  NIP IAFC+TDSP+R+VD+ IP NNKG HSIG +FWLLAR VL+MRG+I     W++M DL+FYR              A+     E +   T+G  +W      GG A  G +      + P  P   AAT P     WD
Sbjct:  121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYR---DPEEAEKEEQAALARQQEEANAGTTAGFSEW------GGAAPWGADPMATAGIAPTIPAPFAATTPAVSADWD 272          
The following BLAST results are available for this feature:
BLAST of CN187023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
RSSA_SALSA3.125e-2967.0640S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_RAT3.125e-2965.8840S ribosomal protein SA OS=Rattus norvegicus GN=R... [more]
RSSA_PIG3.125e-2965.8840S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=... [more]
RSSA_MOUSE3.125e-2965.8840S ribosomal protein SA OS=Mus musculus GN=Rpsa P... [more]
RSSA_HUMAN3.125e-2965.8840S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
RSSA_CERAE3.125e-2965.8840S ribosomal protein SA OS=Cercopithecus aethiops... [more]
RSSA_BOVIN3.125e-2965.8840S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_PINFU1.188e-2864.7140S ribosomal protein SA OS=Pinctada fucata PE=2 S... [more]
RSSA_CRIGR1.551e-2864.7140S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_NEMVE3.455e-2844.7240S ribosomal protein SA OS=Nematostella vectensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187023 ID=CN187023; Name=CN187023; organism=Citrus sinensis; type=EST; length=826bp
CATGTCGTATTGATAGATAAATTTAGATGACTCGGACAAATTTAACATAC
CAAAATATTAGGTACCATCATCATCATCAACAAAACCTAATTCTCAATGT
CTAGAACTATAACTGTGCCAAAAAAAAAAAGATAAAAAAAAAAAAAGAAC
AAAGCCATAGTACTTTGCCGAACATAAAGAAGTTCAAACTAAAACATAGT
TGTAGAAGAAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAA
ATTATTCCCAGCCAGTAGGTTGTGGGGCAGCAGAAACATCAGGAGCTGTA
ATGCTGCCATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACT
GCATCCCATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGG
GAAATAGGGAACAACAGGAATGGGCTTCTGAACTTCACCACCCGCCCACC
CACCATCAGCAATTTGGGAAGGCCATTGCTCACCACTGGTAAGATTCATG
CTGTACTCTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGC
CTGCTTGGTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACAT
CCCACTTGTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTA
GCCAAAAGCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGC
AGGAATGCCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGG
CAATGGTGGGAATGTTTCCAAGAGCAGCTTCCTTAATTGGCTGATGGTCT
GTTCGTGGATCTGTTAGAATGAGAAG
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