CK936945

Overview
NameCK936945
Unique NameCK936945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936945 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.518e-74
Identity = 136/191 (71.20%), Postives = 157/191 (82.20%), Query Frame = 3
Query:  288 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKVIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHL 860
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATK IKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYL 191          
BLAST of CK936945 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.674e-71
Identity = 130/163 (79.75%), Postives = 142/163 (87.12%), Query Frame = 3
Query:  372 LGKEAATKVIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHL 860
            LGKEAA K IKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHL
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHL 163          
BLAST of CK936945 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.783e-58
Identity = 111/144 (77.08%), Postives = 123/144 (85.42%), Query Frame = 3
Query:  429 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHL 860
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHL
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHL 143          
BLAST of CK936945 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.107e-44
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 3
Query:  531 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHL 860
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHL
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHL 110          
BLAST of CK936945 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.943e-21
Identity = 69/255 (27.06%), Postives = 124/255 (48.63%), Query Frame = 3
Query:   81 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRVTKSEHMTELKEKFKRMRDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKVIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVG 845
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  + +K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEG 3025          
The following BLAST results are available for this feature:
BLAST of CK936945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY7.518e-7471.20Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA2.674e-7179.75Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA5.783e-5877.08Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO8.107e-4480.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.943e-2127.06Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_A06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936945 ID=CK936945; Name=CK936945; organism=Citrus sinensis; type=EST; length=861bp
GCGGGGGCACACTCACCAAGCACGAGCCANNNACATATTCATTAAGGGTT
CAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGA
CGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTG
TCAACCAGGCTGATTATCCCGACTATTACTTCAGGGTCACAAAGAGCGAG
CATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGCGTGACAAGTCGAT
GATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACC
CCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATT
GTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGTCAT
CAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCA
CCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTG
ATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATG
TTTCGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACA
ACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACT
TTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTT
GTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGACACGT
CGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGATCCTC
CCTGACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTCTCAC
TTTCCATTTGC
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