EY665845

Overview
NameEY665845
Unique NameEY665845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665845 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   63 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 293
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of EY665845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO9.723e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-C04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665845 ID=EY665845; Name=EY665845; organism=Citrus sinensis; type=EST; length=865bp
CAGCTCACTCGCTTTGCTTTCTTCCGTGCTTTTTCTCTGAAACGATCCGC
TAGGCTTCGACAATGAGCAGATCAGGCCAGCCTCCGGATCTCAAGAAGTA
CATGGATAAGAAGCTTCAGATCAAGCTCAATGCTAATAGGATGATTGTTG
GAACACTTCGTGGATTTGATCAGTTTATGAATCTTGTGATTGACAACACA
GTTGAGGTCAATGGCAATGAGAAAAATGATATAGGGATGGTGGTTATCAG
AGGGAATAGTGTAGTCACTGTTGAAGCCCTTGAACCGGTAAGCAAATCAC
AGTGACGTGGTTTGCCACTGGGGTCGATGTAATGTGCTTTCTGATCTTCT
TTGTGTACTATTATGAATATTAAGGCTGTTAGTATGCAATGGGAGATGTT
TCATGCTGTTGTACCTGAGAAAATTTAGGCCATTTTCTTTGTAATGCTTA
TTCTAAGGGAGCTCGTTTGAACAGGTAATTAGAATTAATCATTGAATGAC
CAATGGAATGAATCAGCAAGATTTAACNNNNAAAANANAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAANNAAA
AAAAAAAAANANAANNAAAAAAAAAAAAAAAGGGGGGGGGGCCCCTTAAA
AGGAACCAATTTAAAAACCCGGGGATGGAAAGCCTAACTTTCTTTTAAAG
GGCGCCCAAAATTCAATTTCCGGGGCCGCGTTTTTAAAACGCGGGGGAGG
GGAAAACCCGGGGGTTCCCCAATTTTAACCCCTTGGGCACCTTCCCCTTT
TCCCCCGTGGGGGAAAAAAAGAAAAAGGCCCCCCCCCCAACCCCCCTTTC
CCAAGAGGGGGCCGC
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